Clone Name | rbastl15a06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 298 catcatgcttcattttcagaacaatgtccattgcatg 334 |||| |||||||||||||||||||||||||||||||| Sbjct: 2724804 catcttgcttcattttcagaacaatgtccattgcatg 2724768 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 195 taacaggagctctaacgcctatttcca 221 ||||||||| ||||||||||||||||| Sbjct: 2724991 taacaggagttctaacgcctatttcca 2724965
>dbj|AK060480.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G08, full insert sequence Length = 1436 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 298 catcatgcttcattttcagaacaatgtccattgcatg 334 |||| |||||||||||||||||||||||||||||||| Sbjct: 1001 catcttgcttcattttcagaacaatgtccattgcatg 965 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 195 taacaggagctctaacgcctatttcca 221 ||||||||| ||||||||||||||||| Sbjct: 1113 taacaggagttctaacgcctatttcca 1087
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 298 catcatgcttcattttcagaacaatgtccattgcatg 334 |||| |||||||||||||||||||||||||||||||| Sbjct: 2724748 catcttgcttcattttcagaacaatgtccattgcatg 2724712 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 195 taacaggagctctaacgcctatttcca 221 ||||||||| ||||||||||||||||| Sbjct: 2724935 taacaggagttctaacgcctatttcca 2724909
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 298 catcatgcttcattttcagaacaatgtccattgcatg 334 |||| |||||||||||||||||||||||||||||||| Sbjct: 93730 catcttgcttcattttcagaacaatgtccattgcatg 93694 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Minus Query: 195 taacaggagctctaacgcctatttcca 221 ||||||||| ||||||||||||||||| Sbjct: 93917 taacaggagttctaacgcctatttcca 93891
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 46.1 bits (23), Expect = 0.089 Identities = 26/27 (96%) Strand = Plus / Plus Query: 195 taacaggagctctaacgcctatttcca 221 ||||||||| ||||||||||||||||| Sbjct: 145456 taacaggagttctaacgcctatttcca 145482
>gb|AC153158.1| Ornithorhynchus anatinus chromosome UNK clone OABb-11C18, complete sequence Length = 109518 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 365 acccaggtcctctgcactccca 386 |||||||||||||||||||||| Sbjct: 92593 acccaggtcctctgcactccca 92572
>gb|AC152953.1| Mus musculus 10 BAC RP23-403E19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 211343 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 actgaactactgaacttaggg 128 ||||||||||||||||||||| Sbjct: 54803 actgaactactgaacttaggg 54783
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 acctttttgtttaatgacttg 263 ||||||||||||||||||||| Sbjct: 947641 acctttttgtttaatgacttg 947621
>gb|AC096647.1| Homo sapiens BAC clone RP11-2G16 from 2, complete sequence Length = 146935 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 tgctgaactatgtaacaggag 203 ||||||||||||||||||||| Sbjct: 45335 tgctgaactatgtaacaggag 45355
>emb|AL627406.15| Mouse DNA sequence from clone RP23-188A12 on chromosome 4, complete sequence Length = 155214 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 gtcctctgcactcccacagtt 391 ||||||||||||||||||||| Sbjct: 49600 gtcctctgcactcccacagtt 49580
>gb|AC160017.2| Mus musculus BAC clone RP23-172C19 from chromosome 9, complete sequence Length = 189417 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 caaacagcactagcagcaac 79 |||||||||||||||||||| Sbjct: 77236 caaacagcactagcagcaac 77217
>gb|AC122459.2| Mus musculus BAC clone RP24-273F21 from chromosome 15, complete sequence Length = 156807 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 acctttttgtttaatgactt 262 |||||||||||||||||||| Sbjct: 75034 acctttttgtttaatgactt 75053
>gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, complete sequence Length = 213032 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 catgcttcattttcagaaca 320 |||||||||||||||||||| Sbjct: 142174 catgcttcattttcagaaca 142193
>emb|AL450398.9| Human DNA sequence from clone RP11-202P11 on chromosome 10 Contains the 3'end of a novel gene containing FLJ40604 and FLJ40930, complete sequence Length = 55063 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 tacctttttgtttaatgact 261 |||||||||||||||||||| Sbjct: 2088 tacctttttgtttaatgact 2107
>emb|AL928965.35| Mouse DNA sequence from clone RP23-60M5 on chromosome 2, complete sequence Length = 92250 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gacccaggtcctctgcactc 383 |||||||||||||||||||| Sbjct: 78733 gacccaggtcctctgcactc 78714
>gb|AC068112.5| Homo sapiens chromosome 18, clone RP11-526H11, complete sequence Length = 165840 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 accaccctacctaccttgaa 171 |||||||||||||||||||| Sbjct: 113094 accaccctacctaccttgaa 113075
>gb|AC155273.3| Mus musculus BAC clone RP23-36K2 from chromosome 12, complete sequence Length = 198927 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ttccaaacatgcaaaacagt 39 |||||||||||||||||||| Sbjct: 96080 ttccaaacatgcaaaacagt 96099
>dbj|AK082896.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430010C01 product:inferred: GLUT4 enhancer factor {Homo sapiens}, full insert sequence Length = 2984 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 gacccaggtcctctgcactc 383 |||||||||||||||||||| Sbjct: 250 gacccaggtcctctgcactc 231
>gb|AF052857.1|AF052857 Dicentra eximia PISTILLATA homolog DePI-1 mRNA, partial cds Length = 894 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 214 tatttccatagaagttgcccttca 237 |||||||||||||| ||||||||| Sbjct: 318 tatttccatagaagatgcccttca 341
>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185068 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 attgcatgctgttgatgttc 346 |||||||||||||||||||| Sbjct: 20698 attgcatgctgttgatgttc 20717
>emb|CT009512.6| Mouse DNA sequence from clone RP23-94B13 on chromosome 14, complete sequence Length = 232468 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tagacccaggtcctctgcac 381 |||||||||||||||||||| Sbjct: 123790 tagacccaggtcctctgcac 123771 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,830,657 Number of Sequences: 3902068 Number of extensions: 3830657 Number of successful extensions: 78432 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78325 Number of HSP's gapped (non-prelim): 107 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)