ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CEAM1_RAT (P16573) Carcinoembryonic antigen-related cell adhesio... 31 0.91
2CP51_MYCVN (Q5IZM4) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (... 28 4.5
3YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor 28 4.5
4RPC1_BPD3 (Q37906) Repressor protein CI 28 7.7
5DUT_EBVA8 (Q07275) Deoxyuridine 5'-triphosphate nucleotidohydrol... 28 7.7
6DUT_EBV (P03195) Deoxyuridine 5'-triphosphate nucleotidohydrolas... 28 7.7

>CEAM1_RAT (P16573) Carcinoembryonic antigen-related cell adhesion molecule 1|
           precursor (Cell-CAM 105) (C-CAM 105) (Ecto-ATPase)
           (ATP-dependenttaurocolate-carrier protein) (GP110)
           (pp120)
          Length = 519

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = +3

Query: 21  YYHCHSRNR*TQDTAGSWMVNTDTTNNATYIHK---YLHQGSDHQLSIQARDKPWPWIFL 191
           YY C +RN  T + +  + ++     +A  I     YLHQGS+  LS  A   P    F 
Sbjct: 212 YYECEARNPATFNRSDPFNLDVIYGPDAPVISPPDIYLHQGSNLNLSCHADSNPPAQYFW 271

Query: 192 CQRANQPTSLHFLVVTTVT 248
                  TS   L ++ +T
Sbjct: 272 LINEKLQTSSQELFISNIT 290



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>CP51_MYCVN (Q5IZM4) Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1)|
           (Sterol 14-alpha demethylase) (Lanosterol 14-alpha
           demethylase) (P450-14DM)
          Length = 452

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 262 TNPLGVTVVTTRKCRDVGWFALWQRKI 182
           T+P+G+      +C DVGWF L  +++
Sbjct: 25  TDPIGLMKRVREECGDVGWFQLADKQV 51



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>YFAL_ECOLI (P45508) Hypothetical protein yfaL precursor|
          Length = 1250

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 51  TQDTA---GSWMVNTDTTNNATYIHKYLHQGSDHQL 149
           TQD +   G W+V +D TNNA+    +L QG++  L
Sbjct: 54  TQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSL 89



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>RPC1_BPD3 (Q37906) Repressor protein CI|
          Length = 223

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 36  SRNR*TQDTAGSWMVNTDTTNNATYIHKYLHQGSDHQLSIQAR 164
           S  R  Q   G+W++ +D  + + Y  +   + S H+L I  R
Sbjct: 172 SIKRLNQQLTGAWLIRSDNPDKSAYPDEMASESSVHELPIIGR 214



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>DUT_EBVA8 (Q07275) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase) (Fragment)
          Length = 275

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 PIEHPSKGQALALDLSLPKSKPADVSTFPSSNYSNTQRV 259
           PI HP     + LD+SLPK    D++ FP    S T  V
Sbjct: 122 PINHPQYPGDVGLDVSLPK----DLALFPHQTVSVTLTV 156



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>DUT_EBV (P03195) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 278

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 PIEHPSKGQALALDLSLPKSKPADVSTFPSSNYSNTQRV 259
           PI HP     + LD+SLPK    D++ FP    S T  V
Sbjct: 122 PINHPQYPGDVGLDVSLPK----DLALFPHQTVSVTLTV 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,510,813
Number of Sequences: 219361
Number of extensions: 861861
Number of successful extensions: 2064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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