ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotrans... 31 0.83
2PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-) 28 4.1
3CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific cat... 28 5.4
4CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase) 28 5.4
57LESS_DROME (P13368) Protein sevenless (EC 2.7.10.1) 28 7.0
6LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precu... 27 9.2
7COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4) 27 9.2
8M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A mem... 27 9.2

>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 634

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 206 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 81
           CN  +S LV   D     TH+G  +GV    SF  +L+C+ +
Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427



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>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)|
          Length = 758

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49  SSKDVTFSTHLIHIQISLRSKDTTSSTPTCP 141
           SSK  + S+HL H+  +  S +T +   TCP
Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175



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>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)|
          Length = 744

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 362 PLGFDLMQVFGVLQHGMLGGKGCRHGGSFTMLLHLGI 252
           P  + +MQ FGV    ++  +G RH   F  + HLG+
Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264



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>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)|
          Length = 750

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 362 PLGFDLMQVFGVLQHGMLGGKGCRHGGSFTMLLHLGI 252
           P  + +MQ FGV    ++  +G RH   F  + HLG+
Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264



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>7LESS_DROME (P13368) Protein sevenless (EC 2.7.10.1)|
          Length = 2554

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 353 FDLMQVFGVLQHGMLGGKGCRHGGSFT-------MLLHLGICWWFIQKHFYSVHQS 207
           FDL Q    L   +  G+   HGG  T       +L+ L IC    + H Y+VHQS
Sbjct: 81  FDLRQQLARLGRQLASGQD-GHGGISTILIINLLLLILLSICCDVCRSHNYTVHQS 135



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>LSHB_HORSE (P08751) Lutropin/choriogonadotropin beta chain precursor|
           (LSH-B/CG-B) (Lutenizing hormone beta subunit)
          Length = 169

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 167 RHATCTHSGGHVGVELVVSFDLKLICICIKCVLKVTSLELIR 42
           R A+    G   GV+ +VSF + L C C  C +K T   + R
Sbjct: 83  RFASIRLPGCPPGVDPMVSFPVALSCHCGPCQIKTTDCGVFR 124



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>COMA_CONMA (Q9TWL9) Conodipine-M alpha chain (EC 3.1.1.4)|
          Length = 77

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 194 QSCLVARMDRHATCTHSGGHVG 129
           Q   +A  DRH TC H G H G
Sbjct: 26  QKXFLAACDRHDTCYHCGKHFG 47



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>M4A8A_MOUSE (Q99N10) Membrane-spanning 4-domains subfamily A member 8A (CD20|
           antigen-like 5) (Fragment)
          Length = 287

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 126 NSYMSTRVGTSGMPVHSGNQTRLQLVTALVDGIKMFLDEPPA 251
           NSY         MP++  NQ ++ +++  + G+   + EPPA
Sbjct: 56  NSYPVVPGTVPQMPIYPSNQPQVHVISGHLPGLVPAMTEPPA 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,483,467
Number of Sequences: 219361
Number of extensions: 1237051
Number of successful extensions: 3280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3280
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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