ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIN13_CAEEL (Q11107) Zinc finger protein lin-13 (Abnormal cell l... 29 3.5
2XKS1_YEAST (P42826) Xylulose kinase (EC 2.7.1.17) (Xylulokinase) 28 4.5
3AMYB_DROME (P81641) Alpha-amylase B precursor (EC 3.2.1.1) (1,4-... 28 4.5
4AMYA_DROME (P08144) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-... 28 4.5
5AMYA_DROMA (P54215) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-... 28 5.9
6AMY2_DROAN (O18345) Alpha-amylase 2 precursor (EC 3.2.1.1) 28 5.9
7AMY1_DROAN (Q23835) Alpha-amylase 1 precursor (EC 3.2.1.1) 28 5.9
8ZN699_HUMAN (Q32M78) Zinc finger protein 699 (Hangover homolog) 28 5.9
9RIM2_YEAST (P38127) Mitochondrial carrier protein RIM2 28 7.7
10WDR63_MACFA (Q95JP0) WD-repeat protein 63 28 7.7
11WDR63_HUMAN (Q8IWG1) WD-repeat protein 63 (Testis development pr... 28 7.7
12AM4N_DROAN (Q23834) Alpha-amylase 4N precursor (EC 3.2.1.1) 28 7.7

>LIN13_CAEEL (Q11107) Zinc finger protein lin-13 (Abnormal cell lineage protein|
            13)
          Length = 2248

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = -2

Query: 248  PYNCRCMNLVFSSQCMILIHVW---CSLWSSAT--ASCPSYPGIELFSIDKGPGTAC--- 93
            P+   C +  F+S+ + + H       L S+ T  + CP    + ++S+ K P T C   
Sbjct: 2030 PFEASCCDARFASKALCVKHDQEHASFLDSNGTDASCCPICGSLSMWSLPKDPHTDCLQS 2089

Query: 92   RFYRNSYDFNCNCEFC 45
               R+  D+  +C  C
Sbjct: 2090 HIIRHGLDYRSSCRQC 2105



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>XKS1_YEAST (P42826) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)|
          Length = 600

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 104 GTACRFYRNSYDFNCNCEFCP 42
           GT C+++   Y FN NC+  P
Sbjct: 275 GTICKYFIEKYGFNTNCKVSP 295



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>AMYB_DROME (P81641) Alpha-amylase B precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 494

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51
           S+A+ S  SYPG+   S+D  P  A   Y ++ +   NCE
Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANEVR-NCE 168



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>AMYA_DROME (P08144) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 494

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51
           S+A+ S  SYPG+   S+D  P  A   Y ++ +   NCE
Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANEVR-NCE 168



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>AMYA_DROMA (P54215) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 494

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51
           S+A+ S  SYPG+   S+D  P  A   Y ++     NCE
Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAINNYNDANQVR-NCE 168



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>AMY2_DROAN (O18345) Alpha-amylase 2 precursor (EC 3.2.1.1)|
          Length = 494

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51
           S+A+ S  SYPG+   S+D  P  A   Y ++     NCE
Sbjct: 130 STASPSSKSYPGVPFSSLDFNPTCAISNYNDANQVR-NCE 168



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>AMY1_DROAN (Q23835) Alpha-amylase 1 precursor (EC 3.2.1.1)|
          Length = 494

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51
           S+A+ S  SYPG+   S+D  P  A   Y ++     NCE
Sbjct: 130 STASPSSKSYPGVPFSSLDFNPTCAISNYNDANQVR-NCE 168



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>ZN699_HUMAN (Q32M78) Zinc finger protein 699 (Hangover homolog)|
          Length = 642

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 266 IHS**KPYNCRCMNLVFSSQCMILIHV 186
           IHS  KPY C+     FSS   ++IH+
Sbjct: 328 IHSGDKPYECKECGKAFSSSSHLIIHI 354



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>RIM2_YEAST (P38127) Mitochondrial carrier protein RIM2|
          Length = 377

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 173 WSSATASCPSYPGIELFSIDKGPGTACRFYRNSYD 69
           W++ATA+ P +       +DK   T+ R Y+NS+D
Sbjct: 187 WATATATNPIWLIKTRVQLDKAGKTSVRQYKNSWD 221



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>WDR63_MACFA (Q95JP0) WD-repeat protein 63|
          Length = 891

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 151 HEAVAELHNEHQTCIRIMHWLENTKFIHR 237
           H AV+ + N H+  I  +HWL +T  I+R
Sbjct: 468 HCAVSSIENGHKRVITDIHWLSDTFEINR 496



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>WDR63_HUMAN (Q8IWG1) WD-repeat protein 63 (Testis development protein NYD-SP29)|
          Length = 891

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 151 HEAVAELHNEHQTCIRIMHWLENTKFIHR 237
           H AV+ + N H+  I  +HWL +T  I+R
Sbjct: 468 HCAVSSIENGHKKVITDIHWLSDTFEINR 496



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>AM4N_DROAN (Q23834) Alpha-amylase 4N precursor (EC 3.2.1.1)|
          Length = 495

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51
           S+A+ S  SYPG+   S+D  P  A   Y ++     NCE
Sbjct: 131 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANQVR-NCE 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,079,034
Number of Sequences: 219361
Number of extensions: 766563
Number of successful extensions: 2348
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2348
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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