Clone Name | rbastl14h12 |
---|---|
Clone Library Name | barley_pub |
>LIN13_CAEEL (Q11107) Zinc finger protein lin-13 (Abnormal cell lineage protein| 13) Length = 2248 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = -2 Query: 248 PYNCRCMNLVFSSQCMILIHVW---CSLWSSAT--ASCPSYPGIELFSIDKGPGTAC--- 93 P+ C + F+S+ + + H L S+ T + CP + ++S+ K P T C Sbjct: 2030 PFEASCCDARFASKALCVKHDQEHASFLDSNGTDASCCPICGSLSMWSLPKDPHTDCLQS 2089 Query: 92 RFYRNSYDFNCNCEFC 45 R+ D+ +C C Sbjct: 2090 HIIRHGLDYRSSCRQC 2105
>XKS1_YEAST (P42826) Xylulose kinase (EC 2.7.1.17) (Xylulokinase)| Length = 600 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -2 Query: 104 GTACRFYRNSYDFNCNCEFCP 42 GT C+++ Y FN NC+ P Sbjct: 275 GTICKYFIEKYGFNTNCKVSP 295
>AMYB_DROME (P81641) Alpha-amylase B precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51 S+A+ S SYPG+ S+D P A Y ++ + NCE Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANEVR-NCE 168
>AMYA_DROME (P08144) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51 S+A+ S SYPG+ S+D P A Y ++ + NCE Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANEVR-NCE 168
>AMYA_DROMA (P54215) Alpha-amylase A precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 130 STASPSSKSYPGVPYSSLDFNPTCAINNYNDANQVR-NCE 168
>AMY2_DROAN (O18345) Alpha-amylase 2 precursor (EC 3.2.1.1)| Length = 494 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 130 STASPSSKSYPGVPFSSLDFNPTCAISNYNDANQVR-NCE 168
>AMY1_DROAN (Q23835) Alpha-amylase 1 precursor (EC 3.2.1.1)| Length = 494 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 130 STASPSSKSYPGVPFSSLDFNPTCAISNYNDANQVR-NCE 168
>ZN699_HUMAN (Q32M78) Zinc finger protein 699 (Hangover homolog)| Length = 642 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 266 IHS**KPYNCRCMNLVFSSQCMILIHV 186 IHS KPY C+ FSS ++IH+ Sbjct: 328 IHSGDKPYECKECGKAFSSSSHLIIHI 354
>RIM2_YEAST (P38127) Mitochondrial carrier protein RIM2| Length = 377 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -2 Query: 173 WSSATASCPSYPGIELFSIDKGPGTACRFYRNSYD 69 W++ATA+ P + +DK T+ R Y+NS+D Sbjct: 187 WATATATNPIWLIKTRVQLDKAGKTSVRQYKNSWD 221
>WDR63_MACFA (Q95JP0) WD-repeat protein 63| Length = 891 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 151 HEAVAELHNEHQTCIRIMHWLENTKFIHR 237 H AV+ + N H+ I +HWL +T I+R Sbjct: 468 HCAVSSIENGHKRVITDIHWLSDTFEINR 496
>WDR63_HUMAN (Q8IWG1) WD-repeat protein 63 (Testis development protein NYD-SP29)| Length = 891 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +1 Query: 151 HEAVAELHNEHQTCIRIMHWLENTKFIHR 237 H AV+ + N H+ I +HWL +T I+R Sbjct: 468 HCAVSSIENGHKKVITDIHWLSDTFEINR 496
>AM4N_DROAN (Q23834) Alpha-amylase 4N precursor (EC 3.2.1.1)| Length = 495 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 170 SSATASCPSYPGIELFSIDKGPGTACRFYRNSYDFNCNCE 51 S+A+ S SYPG+ S+D P A Y ++ NCE Sbjct: 131 STASPSSKSYPGVPYSSLDFNPTCAISNYNDANQVR-NCE 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,079,034 Number of Sequences: 219361 Number of extensions: 766563 Number of successful extensions: 2348 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2348 length of database: 80,573,946 effective HSP length: 76 effective length of database: 63,902,510 effective search space used: 1533660240 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)