ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14h11 |
|---|---|
| Clone Library Name | barley_pub |
>DOCK6_HUMAN (Q96HP0) Dedicator of cytokinesis protein 6| Length = 2047 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = -3 Query: 360 QRIEQHDAPEDIFGAVLETAAQAYGNDESIEVMLEGLANDPELADEYMKLLLAQ 199 Q + +A E + GAVL+ + G+ +S + GLA L ++ +LL + Sbjct: 1401 QTVMLSEARESVLGAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFPELLFEE 1454
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +3 Query: 174 IQTPPSRRLAPAEASCTHQQALGHWQALQA 263 ++ PPS L +C Q +GHWQ L + Sbjct: 403 LKEPPSHCLVHLHKNCIPQYTIGHWQKLDS 432
>PCNT_MOUSE (P48725) Pericentrin| Length = 1920 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/46 (28%), Positives = 30/46 (65%) Frame = -3 Query: 354 IEQHDAPEDIFGAVLETAAQAYGNDESIEVMLEGLANDPELADEYM 217 ++ A +++FG +L A QA+G+ +++E + +GL + E+A ++ Sbjct: 1515 LQAAQAAKEVFGQLL--ADQAHGHSQALEALQQGLQDAEEVAARHL 1558
>BMP5_HUMAN (P22003) Bone morphogenetic protein 5 precursor (BMP-5)| Length = 454 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%) Frame = +2 Query: 59 SRVRYIFSPHFQPRRLKCT-TTRLT--DPAQAVLHDSFLASDSDSTLS 193 +R Y SP+ PRR++ + TT LT P A LHD+ +D+D +S Sbjct: 112 ARKGYPASPNGYPRRIQLSRTTPLTTQSPPLASLHDTNFLNDADMVMS 159
>HSP78_CANAL (Q96UX5) Heat shock protein 78, mitochondrial precursor| Length = 812 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = +2 Query: 26 QKSGRNNYIQKSRVRYIFSPHFQPRRLKCTTTRLTDPAQAVLHDSFLASDSDSTLS 193 Q + +Y + SR++Y P Q + + + L + +LHDS + D +S Sbjct: 415 QATREGDYARASRIQYASIPELQDKIQELSKNELAAKSSNLLHDSVTSEDIAGVIS 470
>ARGJ_SILPO (Q5LWL6) Arginine biosynthesis bifunctional protein argJ [Includes:| Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate syn Length = 408 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/48 (31%), Positives = 18/48 (37%) Frame = +1 Query: 220 VLISKLWVIGKPFKHDXXXXXXXXXXXXXXKDGTKDILRGIMLLDALA 363 V S VIG+P KH+ D +D R IM D A Sbjct: 120 VFTSSTGVIGEPMKHERIVAKLGDLNAALSPDALEDAARAIMTTDTFA 167
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +3 Query: 186 PSRRLAPAEASCTHQQALGHWQALQA*PRCSRRCHKPEQQSQGRHQRYPQGHH 344 P RR + C Q+ Q Q RC +R + +QQSQ + Q Q H Sbjct: 83 PQRRYEECQQECRQQEERQRPQCQQ---RCLKRFEQEQQQSQRQFQECQQHCH 132
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +3 Query: 174 IQTPPSRRLAPAEASCTHQQALGHWQALQA*PRCSRRC-HKPEQQSQGRHQRYPQ 335 +Q PP +PA+ QQ Q QA P S H+ +QQ QG+HQ + Q Sbjct: 1143 LQAPPMH--SPAQQQQQQQQ---QQQQQQASPHLSLSSPHQQQQQQQGQHQNHHQ 1192
>SEM3F_HUMAN (Q13275) Semaphorin-3F precursor (Semaphorin IV) (Sema IV) (Sema| III/F) Length = 785 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = +3 Query: 180 TPP----SRRLAPAEASCTHQQALGHWQALQA*PR---CSRRCHKPEQQSQGRHQRY 329 TPP ++ LA E HQ G+W+ + PR + R +P+ Q + R++R+ Sbjct: 724 TPPYQELAQLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRH 780
>HRCA_CLOPE (Q8XIS9) Heat-inducible transcription repressor hrcA| Length = 339 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -3 Query: 333 EDIFGAVLETAAQAYGNDESIEVMLEGLAN 244 EDI AVL ++ DE+ EV LEG N Sbjct: 210 EDIVNAVLPALYESLKGDETSEVFLEGTIN 239
>GLMN_MOUSE (Q8BZM1) Glomulin (FKBP-associated protein) (FK506-binding| protein-associated protein) (FAP) Length = 596 Score = 27.7 bits (60), Expect = 7.1 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = -3 Query: 369 KACQRIEQHDAPEDIFGAVLETAAQAYGNDESIEVMLEGLANDPELADEYMKLLLAQVG 193 K CQ +E+HD E+ FG + + A Q D I +LE + DE K ++ +G Sbjct: 11 KRCQILEEHDFKEEDFG-LFQLAGQRCIEDGYINQLLE------IIQDEKNKTIIKSMG 62
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 186 PSRRLAPAEASCTHQQALGHWQALQA 263 PS L +C Q LGHWQ L++ Sbjct: 407 PSHCLVHLHKNCIPQYTLGHWQKLES 432
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +3 Query: 186 PSRRLAPAEASCTHQQALGHWQALQA 263 PS L +C Q LGHWQ L++ Sbjct: 407 PSHCLVHLHKNCIPQYTLGHWQKLES 432
>DOCK6_MOUSE (Q8VDR9) Dedicator of cytokinesis protein 6 (Fragment)| Length = 849 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/54 (27%), Positives = 26/54 (48%) Frame = -3 Query: 360 QRIEQHDAPEDIFGAVLETAAQAYGNDESIEVMLEGLANDPELADEYMKLLLAQ 199 Q + +A E I AVL+ + G+ +S + GLA L ++ +LL + Sbjct: 203 QTVMLSEARESILSAVLKVVLYSLGSAQSALFLQHGLATQRALVSKFPELLFEE 256 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,862,910 Number of Sequences: 219361 Number of extensions: 689318 Number of successful extensions: 1934 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1931 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
