>AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3)|
          Length = 489

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +1

Query: 61  KDQNHPKTQTYRQRKRLQTTT*FSSIFRQPRVDP--IIISVAAIEH-ARHRATETSKALD 231
           K  N  KT TY   +++ T     + F+ P V    + I +AA +  A  +   T++ + 
Sbjct: 247 KATNWSKTDTYSLSEKVTT----KNKFQWPLVGETELAIEIAASQSWASQKGGSTTETVS 302

Query: 232 REARETVAPYSMLSV 276
            EAR TV P+S L V
Sbjct: 303 VEARPTVPPHSSLPV 317

>BAS1_YEAST (P22035) Myb-like DNA-binding protein BAS1|
          Length = 811

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 72  PS*NTDIQATEKATNNDIVQFNFSATTRRPH 164
           P  NT I     ATNN+I+Q N SA +  P+
Sbjct: 563 PQANTLIPTNSTATNNEIIQGNVSANSMSPN 593

>AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin)|
          Length = 488

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +1

Query: 61  KDQNHPKTQTYRQRKRLQTTT*FSSIFRQPRVDP--IIISVAAIEH-ARHRATETSKALD 231
           K  N  KT TY   +++ T     + F+ P V    + I +AA +  A  +   T++ + 
Sbjct: 246 KATNWSKTDTYSLSEKVTT----KNKFQWPLVGETELAIEIAASQSWASQKGGSTTETVS 301

Query: 232 REARETVAPYSMLSV 276
            EAR TV P+S L V
Sbjct: 302 VEARPTVPPHSSLPV 316

>SIPB_SALTY (Q56019) Cell invasion protein sipB (Effector protein sipB)|
          Length = 593

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 312
           AA+E A   ATE  +ALD+    TV         +  A ++L KF GT
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233

>SIPB_SALTI (Q56134) Cell invasion protein sipB (Effector protein sipB)|
          Length = 593

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 312
           AA+E A   ATE  +ALD+    TV         +  A ++L KF GT
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233

>SIPB_SALDU (Q79BT1) Cell invasion protein sipB (Effector protein sipB)|
          Length = 593

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 178 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 312
           AA+E A   ATE  +ALD+    TV         +  A ++L KF GT
Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233

>VE7_HPV25 (P36823) Protein E7|
          Length = 102

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 145 QPRVDPIIISVAAIEHARHRATETSKALDREARETVAP 258
           QP V P+ +       A H+ TE   A+DR   + VAP
Sbjct: 19  QPEVQPVDLFCEEELPAEHQETEEEPAIDRTPYKVVAP 56

>RL15_METMA (Q8PV28) 50S ribosomal protein L15P|
          Length = 140

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 186 RTC*ASSHRNK*GAGSRGER 245
           RTC   +H+N+ GAG+RG R
Sbjct: 10  RTCGGGTHKNRRGAGNRGGR 29

>RL15_METAC (Q8TRS5) 50S ribosomal protein L15P|
          Length = 140

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 186 RTC*ASSHRNK*GAGSRGER 245
           RTC   +H+N+ GAG+RG R
Sbjct: 10  RTCGGGTHKNRRGAGNRGGR 29

>SLYA_EDWTA (Q9F6B2) Transcriptional regulator slyA (Edwardsiella haemolysin|
           activator)
          Length = 143

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 131 VQFFGNHASTPSSSQLQL*NMLGIEPPKQVR 223
           V  +  H   P  SQ+QL   +GIE P  VR
Sbjct: 35  VTLYNIHRLPPDQSQIQLAKAIGIEQPSLVR 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,251,186
Number of Sequences: 219361
Number of extensions: 753566
Number of successful extensions: 1741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1741
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)