ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome... 76 7e-11
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 76 7e-11
3dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 7e-11
4dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 7e-11
5gb|AY104073.1| Zea mays PCO099302 mRNA sequence 56 7e-05
6gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1... 50 0.004
7ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.067
8ref|XM_478107.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.067
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.067
10dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.067
11dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.067
12dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.067
13dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.067
14dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.067
15ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 ... 44 0.26
16ref|XM_468390.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.26
17gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, co... 44 0.26
18gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, co... 44 0.26
19gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F1... 44 0.26
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
21gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D... 44 0.26
22dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
23gb|AY111562.1| Zea mays CL51463_1 mRNA sequence 44 0.26
24gb|AY112391.1| Zea mays CL5467_2 mRNA sequence 42 1.0
25gb|AY111168.1| Zea mays CL5467_1 mRNA sequence 42 1.0
26gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete se... 40 4.1
27emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metall... 40 4.1
28gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, comp... 40 4.1
29gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complet... 40 4.1
30gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequ... 40 4.1
31gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, com... 40 4.1 
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06,
             complete sequence
          Length = 136143

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                       
Query: 257   cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacaga 314
             |||||| ||||||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct: 48394 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacaga 48337
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 257      cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacaga 314
                |||||| ||||||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct: 17671636 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacaga 17671579
to top
>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full
            insert sequence
          Length = 3254

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 257  cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacaga 314
            |||||| ||||||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct: 2751 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacaga 2694
to top
>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full
            insert sequence
          Length = 1888

 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 257  cttacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacaga 314
            |||||| ||||||||| || |||||||| |||||||||||||||||||| ||||||||
Sbjct: 1480 cttacaacatgctatcagttcttgcagggagcctcctgaagaagttcagaggaacaga 1423
to top
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence
          Length = 1254

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 259 tacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacaga 314
           ||||||||||| |||||||| || ||||| | |||||||||||| ||||| |||||
Sbjct: 990 tacagcatgctgtcggtcctcgccggcagacgcctgaagaagttgagcgggacaga 935
to top
>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 262   agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaacaga 314
             ||||||| ||| || |||||||||| |||||||||||| || ||||| |||||
Sbjct: 91505 agcatgcaatcagttcttgcaggcaacctcctgaagaaattgagcggcacaga 91453
to top
>ref|XM_506339.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_F08.109 mRNA
          Length = 3486

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 278  ttgcaggcagcctcctgaagaagttca 304
            ||||||| |||||||||||||||||||
Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
to top
>ref|XM_478107.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3402

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 278  ttgcaggcagcctcctgaagaagttca 304
            ||||||| |||||||||||||||||||
Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 278      ttgcaggcagcctcctgaagaagttca 304
                ||||||| |||||||||||||||||||
Sbjct: 17633773 ttgcaggtagcctcctgaagaagttca 17633799
to top
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 278   ttgcaggcagcctcctgaagaagttca 304
             ||||||| |||||||||||||||||||
Sbjct: 37806 ttgcaggtagcctcctgaagaagttca 37832
to top
>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0045A07
          Length = 174165

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 278    ttgcaggcagcctcctgaagaagttca 304
              ||||||| |||||||||||||||||||
Sbjct: 161722 ttgcaggtagcctcctgaagaagttca 161748
to top
>dbj|AK122057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114M07, full
            insert sequence
          Length = 3592

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 278  ttgcaggcagcctcctgaagaagttca 304
            ||||||| |||||||||||||||||||
Sbjct: 3391 ttgcaggtagcctcctgaagaagttca 3365
to top
>dbj|AK067097.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095C11, full
            insert sequence
          Length = 3402

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 278  ttgcaggcagcctcctgaagaagttca 304
            ||||||| |||||||||||||||||||
Sbjct: 3207 ttgcaggtagcctcctgaagaagttca 3181
to top
>dbj|AK064915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M15, full
            insert sequence
          Length = 3486

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 278  ttgcaggcagcctcctgaagaagttca 304
            ||||||| |||||||||||||||||||
Sbjct: 3326 ttgcaggtagcctcctgaagaagttca 3300
to top
>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds
          Length = 2513

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 262  agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311
            ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 2327 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 2278
to top
>ref|XM_468390.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3000

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 283  ggcagcctcctgaagaagttca 304
            ||||||||||||||||||||||
Sbjct: 2975 ggcagcctcctgaagaagttca 2954
to top
>gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, complete cds
          Length = 873

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311
           ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 869 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 820
to top
>gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, complete cds
          Length = 1126

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 262 agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311
           ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 934 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 885
to top
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete
              sequence
          Length = 124511

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 262    agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311
              ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 123365 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 123316
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 283      ggcagcctcctgaagaagttca 304
                ||||||||||||||||||||||
Sbjct: 34979788 ggcagcctcctgaagaagttca 34979767
to top
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
             sequence
          Length = 92652

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 262   agcatgctatcggtccttgcaggcagcctcctgaagaagttcagcggaac 311
             ||||||| ||| || ||||| || ||||||||||||||||| || |||||
Sbjct: 18385 agcatgcaatcagttcttgctggaagcctcctgaagaagttaagtggaac 18336
to top
>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643F09
          Length = 161001

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 283   ggcagcctcctgaagaagttca 304
             ||||||||||||||||||||||
Sbjct: 40129 ggcagcctcctgaagaagttca 40108
to top
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence
          Length = 612

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 259 tacagcatgctatcggtccttgcaggcagcctcctgaagaagttcagcgg 308
           ||||||||||| || ||||| || ||||| | |||||||||||| |||||
Sbjct: 352 tacagcatgctgtcagtcctcgccggcagacgcctgaagaagttgagcgg 401
to top
>gb|AY112391.1| Zea mays CL5467_2 mRNA sequence
          Length = 648

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 278 ttgcaggcagcctcctgaagaagtt 302
           ||||||| |||||||||||||||||
Sbjct: 245 ttgcaggtagcctcctgaagaagtt 269
to top
>gb|AY111168.1| Zea mays CL5467_1 mRNA sequence
          Length = 574

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 278 ttgcaggcagcctcctgaagaagtt 302
           ||||||| |||||||||||||||||
Sbjct: 215 ttgcaggtagcctcctgaagaagtt 239
to top
>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence
          Length = 32563

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   gcaacggaaaaggctacaaa 115
            ||||||||||||||||||||
Sbjct: 5041 gcaacggaaaaggctacaaa 5060
to top
>emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metallothionein 2C, exons 1-4
          Length = 9629

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 80   aaacacagacatacaggcaa 99
            ||||||||||||||||||||
Sbjct: 7720 aaacacagacatacaggcaa 7701
to top
>gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, complete sequence
          Length = 91792

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    aaaacacagacatacaggca 98
             ||||||||||||||||||||
Sbjct: 76720 aaaacacagacatacaggca 76701
to top
>gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complete sequence
          Length = 91810

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    aaaacacagacatacaggca 98
             ||||||||||||||||||||
Sbjct: 38386 aaaacacagacatacaggca 38405
to top
>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence
          Length = 33410

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  ggaaaaggctacaaacaacg 120
            ||||||||||||||||||||
Sbjct: 4549 ggaaaaggctacaaacaacg 4530
to top
>gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, complete sequence
          Length = 40189

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    accatcctaaaacacagaca 90
             ||||||||||||||||||||
Sbjct: 12200 accatcctaaaacacagaca 12181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,817,267
Number of Sequences: 3902068
Number of extensions: 2817267
Number of successful extensions: 46619
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46517
Number of HSP's gapped (non-prelim): 102
length of query: 314
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 292
effective length of database: 17,147,199,772
effective search space: 5006982333424
effective search space used: 5006982333424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top