Clone Name | rbastl14h06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_462272.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G17875g) partial mRNA Length = 405 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 acagttgttgaaacaggta 49 ||||||||||||||||||| Sbjct: 277 acagttgttgaaacaggta 295
>gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete sequence Length = 132267 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 aacagttgttgaaacaggtacaa 52 ||||| ||||||||||||||||| Sbjct: 43210 aacagatgttgaaacaggtacaa 43188
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 acagttgttgaaacaggta 49 ||||||||||||||||||| Sbjct: 1368010 acagttgttgaaacaggta 1368028
>emb|AL110626.1|CNS018P7 Botrytis cinerea strain T4 cDNA library Length = 600 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 tgttgaaacaggtacaaaa 54 ||||||||||||||||||| Sbjct: 124 tgttgaaacaggtacaaaa 106
>emb|AL110625.1|CNS018P6 Botrytis cinerea strain T4 cDNA library Length = 600 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 tgttgaaacaggtacaaaa 54 ||||||||||||||||||| Sbjct: 124 tgttgaaacaggtacaaaa 106
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 38.2 bits (19), Expect = 2.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 caggccaaataacagttgttgaa 42 ||||||||||||||| ||||||| Sbjct: 1056447 caggccaaataacaggtgttgaa 1056425
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 38.2 bits (19), Expect = 2.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 gttgaaacaggtacaaaaa 55 ||||||||||||||||||| Sbjct: 1122512 gttgaaacaggtacaaaaa 1122530
>ref|NM_116330.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / ubiquitin-protein ligase/ zinc ion binding AT4G01020 mRNA, complete cds Length = 5489 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 2660 aacaagttcagttacatc 2677
>ref|NM_121075.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / ubiquitin-protein ligase/ zinc ion binding AT5G10370 mRNA, complete cds Length = 5484 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 2669 aacaagttcagttacatc 2686
>gb|DQ001900.1| Synthetic construct spide silk protein-like protein (SF1) mRNA, complete cds Length = 10624 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 9543 atcaggcccaataacagttgcagaaacagttaca 9576 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 8358 atcaggcccaataacagttgcagaaacagttaca 8391 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 7176 atcaggcccaataacagttgcagaaacagttaca 7209 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 5991 atcaggcccaataacagttgcagaaacagttaca 6024 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 4809 atcaggcccaataacagttgcagaaacagttaca 4842 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 3624 atcaggcccaataacagttgcagaaacagttaca 3657 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 2442 atcaggcccaataacagttgcagaaacagttaca 2475 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 1257 atcaggcccaataacagttgcagaaacagttaca 1290
>gb|AY136628.2| Petunia integrifolia subsp. inflata S2 self-incompatibility ribonuclease (S2-RNase) and S2-locus F-box protein (SLF2) genes, complete cds Length = 328473 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 38 ttgaaacaggtacaaaaa 55 |||||||||||||||||| Sbjct: 316748 ttgaaacaggtacaaaaa 316765
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 3808852 aacaagttcagttacatc 3808869
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 3829520 aacaagttcagttacatc 3829537
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 3829893 aacaagttcagttacatc 3829910
>gb|CP000234.1| Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118, complete genome Length = 242436 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 36 tgttgaaacaggtacaaa 53 |||||||||||||||||| Sbjct: 124442 tgttgaaacaggtacaaa 124425
>gb|AC127421.3| Mus musculus BAC clone RP24-314F1 from chromosome 18, complete sequence Length = 170221 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 aaataacagttgttgaaa 43 |||||||||||||||||| Sbjct: 90564 aaataacagttgttgaaa 90581
>gb|AC116998.3| Mus musculus BAC clone RP23-16F6 from 18, complete sequence Length = 216959 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 26 aaataacagttgttgaaa 43 |||||||||||||||||| Sbjct: 81942 aaataacagttgttgaaa 81959
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 3865559 aacaagttcagttacatc 3865576
>emb|AL589674.9| Human DNA sequence from clone RP11-137J7 on chromosome 6 Contains the NMBR gene for neuromedin B receptor, a novel gene and a CpG island, complete sequence Length = 110764 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 ttcagttacatcaggcca 26 |||||||||||||||||| Sbjct: 17226 ttcagttacatcaggcca 17209
>emb|AL136460.28| Human DNA sequence from clone RP11-102J14 on chromosome 20 Contains a novel gene and the PA2G4P2 gene for proliferation-associated 2G4 pseudogene 2, complete sequence Length = 139030 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 9 ttcagttacatcaggcca 26 |||||||||||||||||| Sbjct: 59760 ttcagttacatcaggcca 59777
>emb|CR848715.9| Zebrafish DNA sequence from clone RP71-23N3, complete sequence Length = 140763 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aaataacagttgttgaaa 43 |||||||||||||||||| Sbjct: 94565 aaataacagttgttgaaa 94548
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 100543 aacaagttcagttacatc 100526
>emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3 Length = 196149 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 55832 aacaagttcagttacatc 55849
>emb|AL080237.1|ATF3I3 Arabidopsis thaliana DNA chromosome 4, BAC clone F3I3, partial sequence (ESSA project) Length = 22145 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 14372 aacaagttcagttacatc 14389
>gb|AC011266.8| Homo sapiens chromosome 18, clone RP11-5A1, complete sequence Length = 167191 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 caagttcagttacatcag 22 |||||||||||||||||| Sbjct: 157348 caagttcagttacatcag 157331
>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence Length = 210849 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 5 caagttcagttacatcag 22 |||||||||||||||||| Sbjct: 34979 caagttcagttacatcag 34962
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 gttgttgaaacaggtaca 51 |||||||||||||||||| Sbjct: 6410586 gttgttgaaacaggtaca 6410569
>emb|BX005309.14| Zebrafish DNA sequence from clone CH211-265M20 in linkage group 10, complete sequence Length = 179240 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 caaataacagttgttgaa 42 |||||||||||||||||| Sbjct: 94781 caaataacagttgttgaa 94798
>gb|AC093765.3| Homo sapiens BAC clone RP11-97F8 from 4, complete sequence Length = 177059 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 24 ccaaataacagttgttga 41 |||||||||||||||||| Sbjct: 21762 ccaaataacagttgttga 21779
>gb|AY174110.1| Araneus ventricosus major ampullate gland dragline silk protein-1 (F1) mRNA, partial cds Length = 1744 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 663 atcaggcccaataacagttgcagaaacagttaca 696
>gb|AC158188.2| Selaginella moellendorffii clone JGIASXY-5I4, complete sequence Length = 37581 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 26 aaataacagttgttgaaa 43 |||||||||||||||||| Sbjct: 13139 aaataacagttgttgaaa 13122
>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1779_B07 Length = 151427 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 34 gttgttgaaacaggtaca 51 |||||||||||||||||| Sbjct: 67153 gttgttgaaacaggtaca 67136
>emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in linkage group 10, complete sequence Length = 156486 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 caaataacagttgttgaa 42 |||||||||||||||||| Sbjct: 118110 caaataacagttgttgaa 118127
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 3829393 aacaagttcagttacatc 3829410
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 aacaagttcagttacatc 20 |||||||||||||||||| Sbjct: 3761782 aacaagttcagttacatc 3761799
>gb|DQ206887.1| Nephila clavata dragline silk protein-like gene, partial sequence Length = 2772 Score = 36.2 bits (18), Expect = 8.0 Identities = 30/34 (88%) Strand = Plus / Plus Query: 18 atcaggccaaataacagttgttgaaacaggtaca 51 |||||||| ||||||||||| ||||||| |||| Sbjct: 885 atcaggcccaataacagttgcagaaacagttaca 918
>dbj|AP004932.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT10J03, TM0094a, complete sequence Length = 65557 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Plus Query: 25 caaataacagttgttgaa 42 |||||||||||||||||| Sbjct: 52125 caaataacagttgttgaa 52142
>emb|AJ291363.1|OEN291363 Orangutan endogenous retrovirus partial proviral DNA, 3' LTR, clone HERV-H/env59 Length = 449 Score = 36.2 bits (18), Expect = 8.0 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 ttcagttacatcaggcca 26 |||||||||||||||||| Sbjct: 82 ttcagttacatcaggcca 65 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 430,638 Number of Sequences: 3902068 Number of extensions: 430638 Number of successful extensions: 113169 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112576 Number of HSP's gapped (non-prelim): 593 length of query: 56 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 36 effective length of database: 17,155,003,908 effective search space: 617580140688 effective search space used: 617580140688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)