>WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warthog protein 1|
           N-product; Warthog protein 1 C-product]
          Length = 485

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 123 SAHLGPELLPAKIEQFPQGASLIHAGAPACFGRLQHRREFAHQDIGHPCVSFWNQSDASS 302
           SA  G   +P + E  P G  ++  G+P CFG     R+  H        SF   +D   
Sbjct: 21  SASCGSSGIPFRFEVLPSGQPVLGCGSPTCFGAENGGRDLRHDS------SFMAGADGDD 74

Query: 303 G 305
           G
Sbjct: 75  G 75

>TOP3_SALTI (Q8Z6F5) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)|
          Length = 649

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 237 PGGAEASQSTPEHRHGSEKPPAE 169
           PGG E  +S P  R G + PPAE
Sbjct: 620 PGGGEKKKSAPRKRAGKKSPPAE 642

>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/66 (36%), Positives = 32/66 (48%)
 Frame = -3

Query: 240 TPGGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELKAKIRAMLLETL*YIVQCDVS 61
           TP GA+   S  E R   EK   +  + S+   Q+ DEL+     ML+E L    + D S
Sbjct: 20  TPSGADEKSSGKERRDAGEKDKEQ--ELSEEDKQLQDELE-----MLVERL---GEKDTS 69

Query: 60  LYYPVL 43
           LY P L
Sbjct: 70  LYRPAL 75

>CEF1_YEAST (Q03654) Pre-mRNA-splicing factor CEF1 (PRP19-associated complex|
           protein 85) (PRP nineteen-associated complex protein 85)
          Length = 590

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -3

Query: 261 DRYLDEQTPGGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELK---AKIRAMLLET 91
           +R L+ +  GGA  S    + + G   P AET  +      + DE K   A+ RA LL T
Sbjct: 103 NRLLESEDSGGAALSTGVTDLKAGDINPNAETQMARPDNGDLEDEEKEMLAEARARLLNT 162

>KHSE_METGL (O32378) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 318

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 60  AIHHIAQCTTMSLIAWP*FSPSAHLGPELLPAKIEQFPQGASLIHAGAPACFGRLQHRRE 239
           A H +   T     AWP     A +   L       FPQ   LIHA  PA F R+  +  
Sbjct: 246 AYHAVRPLTEEEHAAWPGMLRVAGIRFWLSRLNDLHFPQAGELIHAKDPAYFERILRKAI 305

Query: 240 FAHQDI 257
            A + +
Sbjct: 306 AAREQL 311

>CBIO_DESVH (Q72D73) Cobalt import ATP-binding protein cbiO|
          Length = 273

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +3

Query: 204 PACFGRLQHRREFAHQDIGHPCVSFWNQSDASSGASYAHHLQRNDDHPYADALT 365
           P     + H  E AH+   HP     +Q D S      HH   +DDHP+    T
Sbjct: 227 PHVHTHIHHGGEVAHE---HPSRGCCHQHDGSH-----HHAGHDDDHPHTSQTT 272

>GLNE_RHOPA (Q6N8H0) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 990

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -3

Query: 216 QSTPEHRHGSEKPPAETVQSSQAATQVPDELKAKIRAMLLETL*YIVQCDVSLYYPVL 43
           +  PE R       AET     AA    DE+ A +R +  E    I  CD+   +PV+
Sbjct: 90  RGAPEQRLAKLLEDAETFV---AAASAEDEVMAALRRLKAEAALLIALCDIGGIWPVM 144

>ABLM2_RAT (Q6KC51) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 612

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 231 GAEASQSTPEHR-HGSEKPPAETVQSSQAATQVPD 130
           G+E+ +STP    H   +PP+ T Q +     VPD
Sbjct: 391 GSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPD 425

>ABLM2_MOUSE (Q8BL65) Actin-binding LIM protein 2 (Actin-binding LIM protein|
           family member 2) (abLIM2)
          Length = 612

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 231 GAEASQSTPEHR-HGSEKPPAETVQSSQAATQVPD 130
           G+E+ +STP    H   +PP+ T Q +     VPD
Sbjct: 391 GSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPD 425

>CKR1_CHICK (P30373) Zinc finger protein CKR1|
          Length = 509

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
 Frame = +3

Query: 129 HLGPELLPAKI--EQFPQGASLIHAGAPA----------CFGRLQHRREFAHQDIGHPCV 272
           H G    P  +  E+F Q A L+  G             C  R ++   F     GH  +
Sbjct: 325 HTGERPFPCGLCGERFSQKAHLLQHGKTHRPERPYKCGDCGKRFENAPPFLAHRRGHAAL 384

Query: 273 SFWNQSDASSGASYAHHLQRN 335
             +   D   G ++A HLQR+
Sbjct: 385 KSFTCGDCGKGFAWASHLQRH 405

>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)|
            (Strand-exchange protein 1 homolog) (Protein Dhm2)
          Length = 1719

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 252  LDEQTPGGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELK 121
            L    PG +EA++ TP+     E PPA +  SSQAA  V   ++
Sbjct: 1646 LQTNKPGSSEATKMTPQ-----ESPPASS-SSSQAAQPVSSHVE 1683

>TATA_RALSO (Q8XV89) Sec-independent protein translocase protein tatA/E homolog|
          Length = 85

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 198 RHGSEKPPAETVQSSQAATQVPDEL 124
           R GSE  PA + Q  QAA Q P EL
Sbjct: 44  REGSEDKPAGSQQGQQAAGQPPREL 68

>SMPX_RAT (Q925F0) Small muscular protein (Stretch-responsive skeletal muscle|
           protein)
          Length = 85

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 246 EQTPGGAEASQSTPEHRH---GSEKPPAETVQSSQAATQVPDELK 121
           E TPG AE + +TPE +    G +K P   V  S+    V  ELK
Sbjct: 35  ESTPGTAEGAPATPEEKKPVPGMKKFPGPVVNLSE-IQNVKSELK 78

>TOP3_SALTY (P40687) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)|
          Length = 649

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 237 PGGAEASQSTPEHRHGSEKPPA 172
           PGG +  +S P  R G + PPA
Sbjct: 620 PGGGDKKKSAPRKRAGKKSPPA 641

>SRC_RSVP (P00526) Tyrosine-protein kinase transforming protein Src (EC|
           2.7.10.2) (p60-Src) (v-Src) (pp60v-src)
          Length = 525

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 234 GGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELKA 118
           G +++    P  R  S +PP  T      A+Q PDE  A
Sbjct: 1   GSSKSKPKDPSQRRHSLEPPDSTHHGGFPASQTPDETAA 39

>SRC_RSVH1 (P25020) Tyrosine-protein kinase transforming protein Src (EC|
           2.7.10.2) (p60-Src) (v-Src) (pp60v-src)
          Length = 525

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 234 GGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELKA 118
           G +++    P  R  S +PP  T      A+Q PDE  A
Sbjct: 1   GSSKSKPKDPSQRRRSLEPPDSTHHGGFPASQTPDETAA 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,798,476
Number of Sequences: 219361
Number of extensions: 1010479
Number of successful extensions: 2902
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2900
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)