Clone Name | rbastl14h04 |
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Clone Library Name | barley_pub |
>WRT1_CAEEL (Q94128) Warthog protein 1 precursor [Contains: Warthog protein 1| N-product; Warthog protein 1 C-product] Length = 485 Score = 32.7 bits (73), Expect = 0.22 Identities = 18/61 (29%), Positives = 25/61 (40%) Frame = +3 Query: 123 SAHLGPELLPAKIEQFPQGASLIHAGAPACFGRLQHRREFAHQDIGHPCVSFWNQSDASS 302 SA G +P + E P G ++ G+P CFG R+ H SF +D Sbjct: 21 SASCGSSGIPFRFEVLPSGQPVLGCGSPTCFGAENGGRDLRHDS------SFMAGADGDD 74 Query: 303 G 305 G Sbjct: 75 G 75
>TOP3_SALTI (Q8Z6F5) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)| Length = 649 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -3 Query: 237 PGGAEASQSTPEHRHGSEKPPAE 169 PGG E +S P R G + PPAE Sbjct: 620 PGGGEKKKSAPRKRAGKKSPPAE 642
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = -3 Query: 240 TPGGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELKAKIRAMLLETL*YIVQCDVS 61 TP GA+ S E R EK + + S+ Q+ DEL+ ML+E L + D S Sbjct: 20 TPSGADEKSSGKERRDAGEKDKEQ--ELSEEDKQLQDELE-----MLVERL---GEKDTS 69 Query: 60 LYYPVL 43 LY P L Sbjct: 70 LYRPAL 75
>CEF1_YEAST (Q03654) Pre-mRNA-splicing factor CEF1 (PRP19-associated complex| protein 85) (PRP nineteen-associated complex protein 85) Length = 590 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = -3 Query: 261 DRYLDEQTPGGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELK---AKIRAMLLET 91 +R L+ + GGA S + + G P AET + + DE K A+ RA LL T Sbjct: 103 NRLLESEDSGGAALSTGVTDLKAGDINPNAETQMARPDNGDLEDEEKEMLAEARARLLNT 162
>KHSE_METGL (O32378) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 318 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/66 (30%), Positives = 26/66 (39%) Frame = +3 Query: 60 AIHHIAQCTTMSLIAWP*FSPSAHLGPELLPAKIEQFPQGASLIHAGAPACFGRLQHRRE 239 A H + T AWP A + L FPQ LIHA PA F R+ + Sbjct: 246 AYHAVRPLTEEEHAAWPGMLRVAGIRFWLSRLNDLHFPQAGELIHAKDPAYFERILRKAI 305 Query: 240 FAHQDI 257 A + + Sbjct: 306 AAREQL 311
>CBIO_DESVH (Q72D73) Cobalt import ATP-binding protein cbiO| Length = 273 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/54 (31%), Positives = 22/54 (40%) Frame = +3 Query: 204 PACFGRLQHRREFAHQDIGHPCVSFWNQSDASSGASYAHHLQRNDDHPYADALT 365 P + H E AH+ HP +Q D S HH +DDHP+ T Sbjct: 227 PHVHTHIHHGGEVAHE---HPSRGCCHQHDGSH-----HHAGHDDDHPHTSQTT 272
>GLNE_RHOPA (Q6N8H0) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 990 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = -3 Query: 216 QSTPEHRHGSEKPPAETVQSSQAATQVPDELKAKIRAMLLETL*YIVQCDVSLYYPVL 43 + PE R AET AA DE+ A +R + E I CD+ +PV+ Sbjct: 90 RGAPEQRLAKLLEDAETFV---AAASAEDEVMAALRRLKAEAALLIALCDIGGIWPVM 144
>ABLM2_RAT (Q6KC51) Actin-binding LIM protein 2 (Actin-binding LIM protein| family member 2) (abLIM2) Length = 612 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -3 Query: 231 GAEASQSTPEHR-HGSEKPPAETVQSSQAATQVPD 130 G+E+ +STP H +PP+ T Q + VPD Sbjct: 391 GSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPD 425
>ABLM2_MOUSE (Q8BL65) Actin-binding LIM protein 2 (Actin-binding LIM protein| family member 2) (abLIM2) Length = 612 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -3 Query: 231 GAEASQSTPEHR-HGSEKPPAETVQSSQAATQVPD 130 G+E+ +STP H +PP+ T Q + VPD Sbjct: 391 GSESGRSTPSLSVHSDSRPPSSTYQQAPRHFHVPD 425
>CKR1_CHICK (P30373) Zinc finger protein CKR1| Length = 509 Score = 27.7 bits (60), Expect = 7.1 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 12/81 (14%) Frame = +3 Query: 129 HLGPELLPAKI--EQFPQGASLIHAGAPA----------CFGRLQHRREFAHQDIGHPCV 272 H G P + E+F Q A L+ G C R ++ F GH + Sbjct: 325 HTGERPFPCGLCGERFSQKAHLLQHGKTHRPERPYKCGDCGKRFENAPPFLAHRRGHAAL 384 Query: 273 SFWNQSDASSGASYAHHLQRN 335 + D G ++A HLQR+ Sbjct: 385 KSFTCGDCGKGFAWASHLQRH 405
>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)| (Strand-exchange protein 1 homolog) (Protein Dhm2) Length = 1719 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = -3 Query: 252 LDEQTPGGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELK 121 L PG +EA++ TP+ E PPA + SSQAA V ++ Sbjct: 1646 LQTNKPGSSEATKMTPQ-----ESPPASS-SSSQAAQPVSSHVE 1683
>TATA_RALSO (Q8XV89) Sec-independent protein translocase protein tatA/E homolog| Length = 85 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = -3 Query: 198 RHGSEKPPAETVQSSQAATQVPDEL 124 R GSE PA + Q QAA Q P EL Sbjct: 44 REGSEDKPAGSQQGQQAAGQPPREL 68
>SMPX_RAT (Q925F0) Small muscular protein (Stretch-responsive skeletal muscle| protein) Length = 85 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -3 Query: 246 EQTPGGAEASQSTPEHRH---GSEKPPAETVQSSQAATQVPDELK 121 E TPG AE + +TPE + G +K P V S+ V ELK Sbjct: 35 ESTPGTAEGAPATPEEKKPVPGMKKFPGPVVNLSE-IQNVKSELK 78
>TOP3_SALTY (P40687) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)| Length = 649 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -3 Query: 237 PGGAEASQSTPEHRHGSEKPPA 172 PGG + +S P R G + PPA Sbjct: 620 PGGGDKKKSAPRKRAGKKSPPA 641
>SRC_RSVP (P00526) Tyrosine-protein kinase transforming protein Src (EC| 2.7.10.2) (p60-Src) (v-Src) (pp60v-src) Length = 525 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -3 Query: 234 GGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELKA 118 G +++ P R S +PP T A+Q PDE A Sbjct: 1 GSSKSKPKDPSQRRHSLEPPDSTHHGGFPASQTPDETAA 39
>SRC_RSVH1 (P25020) Tyrosine-protein kinase transforming protein Src (EC| 2.7.10.2) (p60-Src) (v-Src) (pp60v-src) Length = 525 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -3 Query: 234 GGAEASQSTPEHRHGSEKPPAETVQSSQAATQVPDELKA 118 G +++ P R S +PP T A+Q PDE A Sbjct: 1 GSSKSKPKDPSQRRRSLEPPDSTHHGGFPASQTPDETAA 39 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,798,476 Number of Sequences: 219361 Number of extensions: 1010479 Number of successful extensions: 2902 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2807 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2900 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)