ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast p... 41 0.001
2ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plas... 36 0.043
3ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membra... 34 0.13
4ATC1_DICDI (P54678) Probable calcium-transporting ATPase PAT1 (E... 32 0.81
5SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 31 1.4
6ACA10_ARATH (Q9SZR1) Putative calcium-transporting ATPase 10, pl... 31 1.4
7ACA9_ARATH (Q9LU41) Putative calcium-transporting ATPase 9, plas... 30 2.4
8ACA8_ARATH (Q9LF79) Calcium-transporting ATPase 8, plasma membra... 29 4.0
9PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4... 28 6.9
10ZN493_HUMAN (Q6ZR52) Zinc finger protein 493 28 6.9
11SCRB_SALTY (P37075) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 28 6.9

>ACA1_ARATH (Q37145) Calcium-transporting ATPase 1, chloroplast precursor (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
            ATPase 1)
          Length = 1020

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = -2

Query: 424  EWFSCIVIGFIGMPIAAIVKLIPVGS 347
            +W   I++GF+GMP+AA +K+IPVGS
Sbjct: 994  QWLVSIILGFLGMPVAAALKMIPVGS 1019



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>ACA7_ARATH (O64806) Putative calcium-transporting ATPase 7, plasma membrane-type|
            (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7)
          Length = 1015

 Score = 35.8 bits (81), Expect = 0.043
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -2

Query: 424  EWFSCIVIGFIGMPIAAIVKLIPV 353
            +WF  I +GF+GMPIAA +K IPV
Sbjct: 992  QWFFSIFVGFLGMPIAAGLKKIPV 1015



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>ACA2_ARATH (O81108) Calcium-transporting ATPase 2, plasma membrane-type (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 2)
          Length = 1014

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -2

Query: 424  EWFSCIVIGFIGMPIAAIVKLIPV 353
            +W   I IGF+GMPIAA +K IPV
Sbjct: 991  QWIFSIFIGFLGMPIAAGLKTIPV 1014



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>ATC1_DICDI (P54678) Probable calcium-transporting ATPase PAT1 (EC 3.6.3.-)|
          Length = 1115

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 424  EWFSCIVIGFIGMPIAAIVKLIPV 353
            EW  C+V+G I +P+  +++ IP+
Sbjct: 946  EWICCVVVGAISLPVGLLLRKIPI 969



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>SCRB_KLEPN (P27217) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 465

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 254 TTAPELHWRHQPLVLLPD 307
           ++A  LHWRH+P+ L+PD
Sbjct: 73  SSADLLHWRHEPIALMPD 90



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>ACA10_ARATH (Q9SZR1) Putative calcium-transporting ATPase 10, plasma|
            membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10)
          Length = 1069

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -2

Query: 421  WFSCIVIGFIGMPIAAIVKLIPV 353
            W  CI IG I  P+A I KLIPV
Sbjct: 1027 WLVCIGIGSISWPLAVIGKLIPV 1049



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>ACA9_ARATH (Q9LU41) Putative calcium-transporting ATPase 9, plasma membrane-type|
            (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)
          Length = 1073

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 421  WFSCIVIGFIGMPIAAIVKLIPV 353
            W + I+IG +  P+A + KLIPV
Sbjct: 1029 WLASIIIGLVSWPLAIVGKLIPV 1051



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>ACA8_ARATH (Q9LF79) Calcium-transporting ATPase 8, plasma membrane-type (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 8)
          Length = 1074

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 424  EWFSCIVIGFIGMPIAAIVKLIPV 353
            +W  C+ IG I  P+A + K IPV
Sbjct: 1024 QWLICVGIGVISWPLALVGKFIPV 1047



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>PZRN4_HUMAN (Q6ZMN7) PDZ domain-containing RING finger protein 4 (Ligand of|
           Numb-protein X 4) (SEMACAP3-like protein)
          Length = 1036

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 155 KTVGLILQKCLIDPL*FLF--SCYFPWSVET*NCMISLQPCTNLKYWRDL 12
           K  G +L++ L  P   +F  SC  PW+V    C +  QP    + +R L
Sbjct: 19  KLCGQVLEEPLCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGELYRVL 68



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>ZN493_HUMAN (Q6ZR52) Zinc finger protein 493|
          Length = 646

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = +3

Query: 48  QAYHTISSF--NTPRKIT*KKKLQGVYQTLLKNQAHSLGSSSKDQMQKKKEGHRFT*I-- 215
           + Y+ ++ +   T  KI    K   V+  LL +  H+   + K   + KK G  F  +  
Sbjct: 9   EGYNELNQYLTTTQSKIFQCDKYVKVFHKLLNSNRHNTKHTGKKPFKCKKCGKSFCMLLH 68

Query: 216 ----KRINSRKNSFLCSQ 257
               KRI+ R+NS+ C +
Sbjct: 69  LCQHKRIHIRENSYRCEE 86



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>SCRB_SALTY (P37075) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 466

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 269 LHWRHQPLVLLPD 307
           LHW+H+P+ L+PD
Sbjct: 79  LHWQHEPIALMPD 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,679,540
Number of Sequences: 219361
Number of extensions: 996050
Number of successful extensions: 2038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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