ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14h01 |
|---|---|
| Clone Library Name | barley_pub |
>ACOC_CUCMA (P49608) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/18 (83%), Positives = 18/18 (100%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 ELAY+N+GGILPYVIRN+ Sbjct: 878 ELAYFNNGGILPYVIRNL 895
>ACOC_ARATH (Q42560) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) Length = 898 Score = 35.0 bits (79), Expect = 0.044 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 ELAY++HGGIL YVIRN+ Sbjct: 878 ELAYFDHGGILQYVIRNL 895
>ACOC_CUCMC (Q42669) Aconitase (EC 4.2.1.3) (Aconitate hydratase) (Citrate| hydro-lyase) (Fragment) Length = 764 Score = 35.0 bits (79), Expect = 0.044 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 ELAY++HGGIL YVIRN+ Sbjct: 742 ELAYFDHGGILQYVIRNL 759
>ACOC_SOLTU (O04916) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate| hydro-lyase) (Aconitase) (Fragment) Length = 616 Score = 34.7 bits (78), Expect = 0.058 Identities = 14/18 (77%), Positives = 16/18 (88%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 ELAY+NHGGIL YVIR + Sbjct: 596 ELAYFNHGGILQYVIRQL 613
>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)| Length = 939 Score = 33.9 bits (76), Expect = 0.099 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMAGAQK 307 E YY HGGIL YV+R MA + K Sbjct: 917 EADYYRHGGILQYVLRQMAASSK 939
>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)| Length = 934 Score = 30.8 bits (68), Expect = 0.84 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMAGA 313 E YY +GGIL YV+RNM A Sbjct: 914 EADYYRNGGILQYVLRNMINA 934
>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)| Length = 937 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMAGA 313 E Y+ HGGIL YV+R MA + Sbjct: 917 EADYFRHGGILQYVLRQMAAS 937
>ACON1_ECOLI (P25516) Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1)| (Aconitase 1) Length = 890 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 EL YY + GIL YVIRNM Sbjct: 871 ELTYYQNDGILHYVIRNM 888
>IREB1_RAT (Q63270) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL Y+++GGIL Y+IR MA Sbjct: 870 ELTYFHNGGILNYMIRKMA 888
>IREB1_MOUSE (P28271) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL Y+++GGIL Y+IR MA Sbjct: 870 ELTYFHNGGILNYMIRKMA 888
>IREB1_CHICK (Q90875) Iron-responsive element binding protein (IRE-BP) (Iron| regulatory protein) (IRP) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/19 (63%), Positives = 16/19 (84%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL Y+++GGIL Y+IR MA Sbjct: 870 ELTYFHNGGILNYMIRKMA 888
>ACON_MYCAV (O08451) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 961 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 E YY +GGIL YV+RNM Sbjct: 940 EADYYRNGGILQYVLRNM 957
>ACON_STAES (Q8CPC2) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 EL YY HGGIL V+RN Sbjct: 881 ELDYYRHGGILQMVLRN 897
>ACON_STAEQ (Q5HPJ0) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 EL YY HGGIL V+RN Sbjct: 881 ELDYYRHGGILQMVLRN 897
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL YY +GGIL YV+R +A Sbjct: 887 ELDYYRNGGILHYVLRKLA 905
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +1 Query: 97 FVQNEHMFHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 234 F+ F N TP K C ARH S G +RP ++ TLD Sbjct: 329 FLPANFSFKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>CDK7_MOUSE (Q03147) Cell division protein kinase 7 (EC 2.7.11.22) (EC| 2.7.11.23) (CDK-activating kinase) (CAK) (TFIIH basal transcription factor complex kinase subunit) (39 kDa protein kinase) (P39 Mo15) (Protein-tyrosine kinase MPK-7) (CR4 protein kinas Length = 346 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +2 Query: 92 EDLFKMNTCFITT------TKLPPSRPAPTPGMEMP 181 + LF N C TT TK +RP PTPG ++P Sbjct: 273 QGLFLFNPCTRTTASQALKTKYFSNRPGPTPGCQLP 308
>ACOC_CAEEL (Q23500) Probable aconitate hydratase, cytoplasmic (EC 4.2.1.3)| (Citrate hydro-lyase) (Aconitase) Length = 887 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 EL YY +GGIL Y+IR + Sbjct: 868 ELTYYRNGGILQYMIRKL 885
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 290 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 171 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42
>ACON_STAAW (P63434) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 E+ YY HGGIL V+RN Sbjct: 881 EMDYYRHGGILQMVLRN 897
>ACON_STAAS (Q6G9K9) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 E+ YY HGGIL V+RN Sbjct: 881 EMDYYRHGGILQMVLRN 897
>ACON_STAAR (Q6GH55) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 E+ YY HGGIL V+RN Sbjct: 881 EMDYYRHGGILQMVLRN 897
>ACON_STAAN (P99148) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 E+ YY HGGIL V+RN Sbjct: 881 EMDYYRHGGILQMVLRN 897
>ACON_STAAM (P63433) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 E+ YY HGGIL V+RN Sbjct: 881 EMDYYRHGGILQMVLRN 897
>ACON_STAAC (Q5HG69) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 901 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRN 325 E+ YY HGGIL V+RN Sbjct: 881 EMDYYRHGGILQMVLRN 897
>ACON_LEGPH (P37032) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) (Major iron-containing protein) (MICP) (IP210) Length = 891 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL YY +GGIL YV+R ++ Sbjct: 872 ELEYYKNGGILQYVLRKIS 890
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = -2 Query: 323 WQELRNRRTRPHTLFDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQ 153 +++ R R FD D A+ + V PWT V C G M+ I + + LA A Sbjct: 906 YEQTRRCTLRGMLDFDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAM 965 Query: 152 VDLGG 138 LGG Sbjct: 966 NRLGG 970
>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)| Length = 936 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNM 322 E YY +GGIL +V+RNM Sbjct: 915 EADYYRNGGILQFVLRNM 932
>IREB1_RABIT (Q01059) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL Y ++GGIL Y+IR MA Sbjct: 870 ELTYLHNGGILNYMIRKMA 888
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 375 ELAYYNHGGILPYVIRNMA 319 EL Y+ +GGIL Y+IR MA Sbjct: 870 ELTYFLNGGILNYMIRKMA 888
>INX10_CAEEL (Q22549) Innexin-10| Length = 559 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +1 Query: 1 KKNTRNCYQFKYVFSTKQCTPGSTNLIHHN*RFVQNEHMFHNHNQTPPKSTCAHAR 168 K+N +N Q Y ++ + TP + N +QN++ + N+ +TP S +R Sbjct: 490 KQNQQNATQPPYCYTNQNPTP------YQNQNQIQNQNQYSNYYRTPSLSRGTDSR 539
>NUKM_BRAOL (P42027) NADH-ubiquinone oxidoreductase 20 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD) Length = 215 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +2 Query: 11 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALF 190 L + S+ A S++H +LP S T T T PPS AP PG+ A F Sbjct: 12 LPLVLQSHRAAAVSHLHTSLPALSPAT-------TPTSYTRPGPPSTSAPPPGLSKTAEF 64 Query: 191 SV 196 + Sbjct: 65 VI 66
>VL2_HPV31 (P17389) Minor capsid protein L2| Length = 466 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +2 Query: 23 TSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALFSVYS 202 TS ++ L+ S++ ST + M+T ++T + P PG+ PA +YS Sbjct: 172 TSGHLLLSSSSI-------STHNYEEIPMDTFIVSTNNENITSSTPIPGVRRPARLGLYS 224
>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 11 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 139 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 11 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 139 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,069,796 Number of Sequences: 219361 Number of extensions: 1323943 Number of successful extensions: 3668 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3664 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
