ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NINAG_DROME (Q9VGP2) Neither inactivation nor afterpotential pro... 30 1.7
2WDR24_XENLA (Q7ZX22) WD-repeat protein 24 28 5.0
3DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV) 28 8.4

>NINAG_DROME (Q9VGP2) Neither inactivation nor afterpotential protein G|
           precursor (EC 1.-.-.-)
          Length = 581

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 79  NLHNHGGIPLSVKHGVTGPS 138
           NLH+H  +PL V  GVTGP+
Sbjct: 307 NLHDHFNLPLFVSMGVTGPT 326



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>WDR24_XENLA (Q7ZX22) WD-repeat protein 24|
          Length = 780

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 29  SLNFSTYDVSWPLMDDKIYIT--TEVYPYRLNMGSPA 133
           SLNFS  DV W  MDD +  T  T       N+G P+
Sbjct: 67  SLNFSCADVVWHQMDDNLLATAATNGVVVTWNLGKPS 103



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>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  SLNFSTYDVSWPLMDDKIYITTEVYPYRLNMGSP 130
           S N STYD  W ++++K+Y   E    RL   SP
Sbjct: 254 SQNISTYDECWQVIEEKLYPELE---KRLERASP 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,535,617
Number of Sequences: 219361
Number of extensions: 489045
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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