Clone Name | rbastl14g10 |
---|---|
Clone Library Name | barley_pub |
>NPY2R_CHICK (Q9DDN6) Neuropeptide Y receptor type 2 (NPY2-R) (NPY-Y2 receptor)| Length = 385 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 7 VLWIIYH*FTNVSSICRNLLTIGTYEIIYTFHHI 108 V W+ +H F VS I +L + Y++IYT H+ Sbjct: 283 VSWLPFHAFQLVSDIDSQVLDLKEYKLIYTVFHV 316
>PCP1_YEAST (P53259) Rhomboid protein 1, mitochondrial precursor (EC| 3.4.21.105) (Processing of cytochrome c peroxidase protein 1) (Mitochondrial distribution and morphology protein 37) Length = 346 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = +1 Query: 91 YTFHHISMSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSIS 270 Y F H+ N +++ LG N FGL + P WRF Y+L + + IS Sbjct: 127 YLFEHVPPFTYFKTHPKNLVYALLGINVAVFGL-WQLPKCWRFLQKYMLLQKDYVTSKIS 185
>YJHI_ECOLI (P39360) Putative HTH-type transcriptional regulator yjhI| Length = 262 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 18 YLPLIYKCFKHLSESLNYRNLRDHL 92 YL L+ KC + +S L YRN +HL Sbjct: 234 YLELLRKCAEQISYGLGYRNENEHL 258
>ARGC_MORAB (Q9K4Z1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 336 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = -2 Query: 222 RESPLIWALATKAESPLIWAQIGEDLIAFFSVQKL---GHANMVECVN 88 R +P I A+ A L W Q G+DLI ++ L A ++C+N Sbjct: 277 RRTPSIKAVEKTAYYDLAWQQQGQDLIVVSAIDNLLKGAAAQAMQCIN 324
>OR22B_DROME (P81910) Odorant receptor 22b| Length = 397 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 10/71 (14%) Frame = +1 Query: 97 FHHISMSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFSY----------MYVLFPE 246 F HI L R K F YL W FG +W Y +++L P Sbjct: 6 FPHIKEKPLSERVKSRDAFVYLDRVMWSFGWTVPENKRWDLHYKLWSTFVTLVIFILLPI 65 Query: 247 TFPAQSISRLK 279 + + I R K Sbjct: 66 SVSVEYIQRFK 76
>COG4_HUMAN (Q9H9E3) Conserved oligomeric Golgi complex component 4| Length = 785 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 46 SICRNLLTIGTYEIIYTFHHIS-MSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFS 222 S+ L T+ T+ I F +S M+ +LN ++ I Y GPN GP WR + Sbjct: 710 SLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPN--------SGPLTWRLT 761
>WN10B_PLEJO (P28132) Protein Wnt-10b (Fragment)| Length = 117 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -2 Query: 294 RTVGIFQPRYTLGRERLREKYVHIRESPLIWALATKAESP 175 + G+F PR L ++RL ++ V+ +SP TK +SP Sbjct: 38 KNTGVFHPR-RLKKKRLAKELVYFEKSPDFCERDTKVDSP 76
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -3 Query: 143 LHFFLFKSWDMLIWW 99 LHF LF SW +LIW+ Sbjct: 303 LHFVLFLSWALLIWF 317 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,117,062 Number of Sequences: 219361 Number of extensions: 967330 Number of successful extensions: 2226 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2194 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2226 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)