ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPY2R_CHICK (Q9DDN6) Neuropeptide Y receptor type 2 (NPY2-R) (NP... 30 1.2
2PCP1_YEAST (P53259) Rhomboid protein 1, mitochondrial precursor ... 30 2.0
3YJHI_ECOLI (P39360) Putative HTH-type transcriptional regulator ... 29 2.7
4ARGC_MORAB (Q9K4Z1) N-acetyl-gamma-glutamyl-phosphate reductase ... 29 3.5
5OR22B_DROME (P81910) Odorant receptor 22b 28 7.8
6COG4_HUMAN (Q9H9E3) Conserved oligomeric Golgi complex component 4 28 7.8
7WN10B_PLEJO (P28132) Protein Wnt-10b (Fragment) 28 7.8
8MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycopro... 28 7.8

>NPY2R_CHICK (Q9DDN6) Neuropeptide Y receptor type 2 (NPY2-R) (NPY-Y2 receptor)|
          Length = 385

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 7   VLWIIYH*FTNVSSICRNLLTIGTYEIIYTFHHI 108
           V W+ +H F  VS I   +L +  Y++IYT  H+
Sbjct: 283 VSWLPFHAFQLVSDIDSQVLDLKEYKLIYTVFHV 316



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>PCP1_YEAST (P53259) Rhomboid protein 1, mitochondrial precursor (EC|
           3.4.21.105) (Processing of cytochrome c peroxidase
           protein 1) (Mitochondrial distribution and morphology
           protein 37)
          Length = 346

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = +1

Query: 91  YTFHHISMSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFSYMYVLFPETFPAQSIS 270
           Y F H+           N +++ LG N   FGL  + P  WRF   Y+L  + +    IS
Sbjct: 127 YLFEHVPPFTYFKTHPKNLVYALLGINVAVFGL-WQLPKCWRFLQKYMLLQKDYVTSKIS 185



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>YJHI_ECOLI (P39360) Putative HTH-type transcriptional regulator yjhI|
          Length = 262

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 18  YLPLIYKCFKHLSESLNYRNLRDHL 92
           YL L+ KC + +S  L YRN  +HL
Sbjct: 234 YLELLRKCAEQISYGLGYRNENEHL 258



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>ARGC_MORAB (Q9K4Z1) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 336

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 222 RESPLIWALATKAESPLIWAQIGEDLIAFFSVQKL---GHANMVECVN 88
           R +P I A+   A   L W Q G+DLI   ++  L     A  ++C+N
Sbjct: 277 RRTPSIKAVEKTAYYDLAWQQQGQDLIVVSAIDNLLKGAAAQAMQCIN 324



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>OR22B_DROME (P81910) Odorant receptor 22b|
          Length = 397

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
 Frame = +1

Query: 97  FHHISMSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFSY----------MYVLFPE 246
           F HI    L  R K    F YL    W FG       +W   Y          +++L P 
Sbjct: 6   FPHIKEKPLSERVKSRDAFVYLDRVMWSFGWTVPENKRWDLHYKLWSTFVTLVIFILLPI 65

Query: 247 TFPAQSISRLK 279
           +   + I R K
Sbjct: 66  SVSVEYIQRFK 76



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>COG4_HUMAN (Q9H9E3) Conserved oligomeric Golgi complex component 4|
          Length = 785

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 46  SICRNLLTIGTYEIIYTFHHIS-MSQLLNRKKCN*IFSYLGPNQWRFGLRGEGPNQWRFS 222
           S+   L T+ T+ I   F  +S M+ +LN ++   I  Y GPN         GP  WR +
Sbjct: 710 SLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPN--------SGPLTWRLT 761



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>WN10B_PLEJO (P28132) Protein Wnt-10b (Fragment)|
          Length = 117

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 294 RTVGIFQPRYTLGRERLREKYVHIRESPLIWALATKAESP 175
           +  G+F PR  L ++RL ++ V+  +SP      TK +SP
Sbjct: 38  KNTGVFHPR-RLKKKRLAKELVYFEKSPDFCERDTKVDSP 76



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>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)|
          Length = 1316

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 143 LHFFLFKSWDMLIWW 99
           LHF LF SW +LIW+
Sbjct: 303 LHFVLFLSWALLIWF 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,117,062
Number of Sequences: 219361
Number of extensions: 967330
Number of successful extensions: 2226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2226
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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