ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxyge... 333 2e-88
2gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete seq... 40 3.9
3emb|BX546446.15| Zebrafish DNA sequence from clone DKEY-7K24 in ... 40 3.9
4emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-1... 40 3.9
5emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-9... 40 3.9
6emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-2... 40 3.9
7gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase... 40 3.9

>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein
            (lox gene)
          Length = 3123

 Score =  333 bits (168), Expect = 2e-88
 Identities = 182/189 (96%)
 Strand = Plus / Minus

                                                                        
Query: 107  ttagcatgtcccaacttttgaacagnnnnnnntgcaattaaatcttctcctatctgggcc 166
            |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 3109 ttagcatgtcccaacttttgaacagaaaaaaatgcaattaaatcttctcctatctgggcc 3050

                                                                        
Query: 167  caaatcaatggcgattcggccttcgtggcgagggcccaaatcaatggcgattctcttata 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3049 caaatcaatggcgattcggccttcgtggcgagggcccaaatcaatggcgattctcttata 2990

                                                                        
Query: 227  tgtacgtacttttccctgagacgttcccggcccaaagtatatcgaggctgaaaaattccc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2989 tgtacgtacttttccctgagacgttcccggcccaaagtatatcgaggctgaaaaattccc 2930

                     
Query: 287  acggtccgc 295
            |||||||||
Sbjct: 2929 acggtccgc 2921



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>gb|AC147885.2| Xenopus tropicalis clone CH216-12C9, complete sequence
          Length = 222162

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    ttaccattgatttacaaatg 40
             ||||||||||||||||||||
Sbjct: 70840 ttaccattgatttacaaatg 70859



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>emb|BX546446.15| Zebrafish DNA sequence from clone DKEY-7K24 in linkage group 6,
             complete sequence
          Length = 196818

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    taccattgatttacaaatgtttca 45
             |||||||| |||||||||||||||
Sbjct: 55164 taccattgctttacaaatgtttca 55187



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>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176202

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     ccattgatttacaaatgttt 43
              ||||||||||||||||||||
Sbjct: 136492 ccattgatttacaaatgttt 136473



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>emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-90P16 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167642

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   acaaatgtttcaagcatctg 53
            ||||||||||||||||||||
Sbjct: 6341 acaaatgtttcaagcatctg 6360



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>emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-214N1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145035

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     acaaatgtttcaagcatctg 53
              ||||||||||||||||||||
Sbjct: 128282 acaaatgtttcaagcatctg 128301



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>gb|M63291.1|DROADHDS Drosophila silvestris alcohol dehydrogenase gene, complete cds
          Length = 1635

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 220 tcttatatgtacgtacttttccctgaga 247
           |||||| ||||| |||||||||||||||
Sbjct: 189 tcttatttgtacatacttttccctgaga 162


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,080,203
Number of Sequences: 3902068
Number of extensions: 2080203
Number of successful extensions: 35736
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35724
Number of HSP's gapped (non-prelim): 9
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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