Clone Name | rbastl14g08 |
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Clone Library Name | barley_pub |
>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium| channel protein type VII alpha subunit) (Putative voltage-gated sodium channel alpha subunit Nax) (Sodium channel protein, cardiac and skeletal muscle alpha-subunit) Length = 1682 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +3 Query: 162 KRRQRKTAIGGGKDV*KHCRNSPCSTHILTTYENSHSFYRPSRPK 296 K Q K+ GG K+ K +S CST + E FY R K Sbjct: 851 KEIQSKSGDGGSKEKIKQSSSSECSTVDIAISEEEEMFYGGERSK 895
>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 605 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 172 WRRLADACRTTEVLGTHGLQCIFLMTMVHNVVI 74 W+ +AD CRTT LG HG + + +VV+ Sbjct: 50 WKSIADECRTT--LGPHGFGAVQVSPPQEHVVL 80
>GBB_SCHPO (Q10282) Guanine nucleotide-binding protein beta subunit| Length = 305 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -3 Query: 157 DACRTTEVLGTHGLQCIFLMTMVHNVVIFIYGGP*RFRNFWSLRKQYLC 11 + + VL H + + L + N +F+ GG + W LR Y C Sbjct: 135 EQAKAISVLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCC 183
>MIPO1_HUMAN (Q8TD10) Mirror-image polydactyly gene 1 protein| Length = 442 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +2 Query: 47 ESLWATVDKNYNVMDHRH*KNTLETMGP 130 ES++ T +K YNVM+HRH E M P Sbjct: 74 ESVYCTTEK-YNVMEHRHNDMHYECMTP 100
>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 340 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%) Frame = -2 Query: 161 GRCMQNN*GFGDPW--SPVYFFND 96 GRC + N GF PW SP F ND Sbjct: 227 GRCHKQNSGFEGPWTFSPTMFTND 250
>METK_MYCGE (P47293) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 383 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 5/31 (16%) Frame = -1 Query: 93 WSIT-----L*FLSTVAHSDSEIFGHYGNNI 16 WSIT L L V +SD ++GH+GN++ Sbjct: 333 WSITKIIDKLKLLDFVKYSDYAVYGHFGNDL 363
>PROA_PASMU (Q9CM98) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 420 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 142 LFCMHLPNVAKEKPLLEEAKTSR-NTAETLHVLLISSQRMKTAIPFIA 282 LF ++ K PL+E AKT R +T TL LL+ +P +A Sbjct: 230 LFIEQSADLDKALPLIENAKTQRPSTCNTLETLLVQRAIATQFLPKLA 277
>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor| (EC 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 27.3 bits (59), Expect = 9.5 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 Query: 111 HWRPWVPKTSVVLHASAKRRQR 176 HWRPW P + + +R+QR Sbjct: 459 HWRPWTPCKTFAQRSLRRRQQR 480
>RF1_HELPY (P55998) Peptide chain release factor 1 (RF-1)| Length = 352 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 157 LPNVAKEKPLLEEAKTSRNTAETLHVLLISSQRMKTAI 270 L N+ + K LLE+ + S E L +L I ++TAI Sbjct: 58 LENIKENKELLEDKELSELAKEELKILEIQKSDLETAI 95
>Y2654_BACSK (Q5WEM1) UPF0176 protein ABC2654| Length = 322 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +3 Query: 213 HCRNSPCSTHILTTYENSHSFYRPSRPKAQ 302 +C N C+ IL + EN H + R P+ + Sbjct: 260 NCANPECNKQILCSEENEHKYLRGCTPECR 289
>FADB_SHEON (Q8EKR9) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 716 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +1 Query: 133 KPQLFC-MHLPNVAKEKPLLEEAKTSRNTAETL-HVLLISSQRMKTAI 270 KP+ FC MH N + PL+E + ++ ET+ V+ +S+ KT I Sbjct: 442 KPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPI 489 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,067,467 Number of Sequences: 219361 Number of extensions: 1092498 Number of successful extensions: 2427 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2379 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2426 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)