ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.3
2NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.3
3CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25 28 7.0
4PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 28 7.0
5ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disinteg... 28 7.0
6RW1_DROME (Q9V7H4) RW1 protein homolog 27 9.1
7KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 27 9.1
8KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4 27 9.1
9APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4... 27 9.1

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 324 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 187
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -3

Query: 324 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 187
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
 Frame = +3

Query: 36  LTQKQRKQRSLQRPN*RSQQCLRFA----KKKKNNGGPEGTSHHRLHYWAKQ------GI 185
           +T+  R +R+  RP  + +   RFA    K+K+ N  P+G    R    A +      G 
Sbjct: 405 VTRSHRDKRNSYRPEYKDEDDKRFAQRKDKEKEMNALPKGLQQMRAKLLASKKTTTVSGT 464

Query: 186 FSAHDDALTGSQLS*ASACRSDPS 257
                 A +GSQ + ++A  S P+
Sbjct: 465 SQTPTSAPSGSQRTPSAASGSSPT 488



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>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 275
           PE  ++   HYW    I S+H+  LTG Q S  S+  +   C    C
Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361



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>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 797

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = -3

Query: 234 KLSSAGYRSMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVI 85
           KL + GY   H R     +VL  N  D   +   +R F  SW         SG++V+
Sbjct: 87  KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVL 143



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>RW1_DROME (Q9V7H4) RW1 protein homolog|
          Length = 1567

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 228  SSAGYRSMHRRV-QKKSLVLPNNEVDGVMFPPALRCFSSSWQTSGIV 91
            +  G+R   R+  QK +     N       P AL+C S+ W+TS  V
Sbjct: 1305 AGVGFRKPERKQRQKLNFGQTTNSTSPPESPDALKCISNPWETSSRV 1351



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>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 229 ELPHADQTRRARTLIALIIHAPAQLSV 309
           ELP  D TR +RTL  L+ HAP  + +
Sbjct: 7   ELPAPDATRISRTLSYLLRHAPQTIGL 33



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>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4|
          Length = 520

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 120 KNNGGPEGTSHHRLHYWAKQ 179
           K+ GGP G S HR+  W +Q
Sbjct: 169 KSTGGPSGRSGHRMVAWKRQ 188



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>APEA_THENE (O86957) Probable M18-family aminopeptidase 1 (EC 3.4.11.-)|
          Length = 452

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 120 KNNGGPEGTSHHRLHYWAKQGIFS 191
           K  GGPE  + H + YW K  + S
Sbjct: 303 KIQGGPEIQNSHSMRYWKKSAVIS 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,220,942
Number of Sequences: 219361
Number of extensions: 1123170
Number of successful extensions: 2566
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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