ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in ... 42 0.94
2gb|AC169675.2| Mus musculus BAC clone RP24-200J3 from chromosome... 40 3.7
3gb|AY423026.1| Danio rerio dystrobrevin, beta (DTNB) mRNA, compl... 40 3.7
4emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on ch... 40 3.7
5emb|CR388171.5| Zebrafish DNA sequence from clone CH211-261O7, c... 40 3.7
6gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 3.7
7ref|NM_199709.1| Danio rerio dystrobrevin, beta (dtnb), mRNA 40 3.7
8gb|AC084480.1|CBRG02E15 Caenorhabditis briggsae cosmid G02E15, c... 40 3.7
9dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 3.7
10emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on ch... 40 3.7
11dbj|AP004968.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 3.7
12dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 3.7

>emb|CR626875.10| Zebrafish DNA sequence from clone DKEY-31J4 in linkage group 15, complete
              sequence
          Length = 212742

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 163    cttcaattgtgtatgaagctcccag 187
              |||||||||||||| ||||||||||
Sbjct: 176829 cttcaattgtgtataaagctcccag 176853



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>gb|AC169675.2| Mus musculus BAC clone RP24-200J3 from chromosome 17, complete
            sequence
          Length = 171242

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   aactgagaaatagtacaaag 91
            ||||||||||||||||||||
Sbjct: 5784 aactgagaaatagtacaaag 5803



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>gb|AY423026.1| Danio rerio dystrobrevin, beta (DTNB) mRNA, complete cds
          Length = 3069

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 caggaagcttcagcgcctcc 270
           ||||||||||||||||||||
Sbjct: 481 caggaagcttcagcgcctcc 462



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>emb|AL731897.12| Human DNA sequence from clone RP11-284G10 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 125196

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ccagcaggcaggaagagcac 236
             ||||||||||||||||||||
Sbjct: 73809 ccagcaggcaggaagagcac 73790



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>emb|CR388171.5| Zebrafish DNA sequence from clone CH211-261O7, complete sequence
          Length = 145218

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aagggcaacacattatgcat 41
             ||||||||||||||||||||
Sbjct: 96529 aagggcaacacattatgcat 96510



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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 142     ttccagataccagtggcagacctt 165
               |||||||||||||| |||||||||
Sbjct: 3528746 ttccagataccagtcgcagacctt 3528769



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>ref|NM_199709.1| Danio rerio dystrobrevin, beta (dtnb), mRNA
          Length = 3069

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 caggaagcttcagcgcctcc 270
           ||||||||||||||||||||
Sbjct: 481 caggaagcttcagcgcctcc 462



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>gb|AC084480.1|CBRG02E15 Caenorhabditis briggsae cosmid G02E15, complete sequence
          Length = 42065

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    tctcaaaacatcaaacataa 73
             ||||||||||||||||||||
Sbjct: 35303 tctcaaaacatcaaacataa 35284



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>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
              sequence
          Length = 165755

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    ccagcaggcaggaagagcac 236
              ||||||||||||||||||||
Sbjct: 149607 ccagcaggcaggaagagcac 149588



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>emb|CT010437.15| Mouse DNA sequence from clone RP23-333O22 on chromosome 17, complete
              sequence
          Length = 172696

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     aactgagaaatagtacaaag 91
              ||||||||||||||||||||
Sbjct: 139101 aactgagaaatagtacaaag 139120



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>dbj|AP004968.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43O24, TM0145,
             complete sequence
          Length = 134976

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 58    aaaacatcaaacataactgagaaa 81
             ||||||| ||||||||||||||||
Sbjct: 59337 aaaacataaaacataactgagaaa 59360



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>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 5/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ccagcaggcaggaagagcac 236
             ||||||||||||||||||||
Sbjct: 97388 ccagcaggcaggaagagcac 97369


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,653,763
Number of Sequences: 3902068
Number of extensions: 2653763
Number of successful extensions: 47016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46984
Number of HSP's gapped (non-prelim): 32
length of query: 285
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 263
effective length of database: 17,147,199,772
effective search space: 4509713540036
effective search space used: 4509713540036
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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