>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 45/60 (75%), Positives = 46/60 (76%)
 Frame = -3

Query: 325  LYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 146
            LYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 992  LYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 86.7 bits (213), Expect = 1e-17
 Identities = 45/60 (75%), Positives = 46/60 (76%)
 Frame = -3

Query: 325  LYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 146
            LYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL              DIPLVSVYFR
Sbjct: 992  LYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 38/60 (63%), Positives = 43/60 (71%)
 Frame = -3

Query: 325  LYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 146
            LYN+MF RHKDRL +KVVD+AREVAK++VP YRRHL              DIPLVSVYFR
Sbjct: 994  LYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053

>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)|
          Length = 205

 Score = 34.3 bits (77), Expect = 0.080
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
 Frame = -3

Query: 325 LYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSYRRHL 218
           LY S FP  + KDRL  K+  + +EV+K EVPS+ ++L
Sbjct: 145 LYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182

>Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064|
          Length = 675

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 173 VNVIVIVILTGHHNIQMAPIRGHLHLGHLPGNIDHLPVQPILVPGEH 313
           VN  V+V+  GHH I   P   HL    + G + H+P  P+L   +H
Sbjct: 456 VNHAVVVLANGHH-ITDWPQTRHLPGYAVRGQVSHIPTNPVLGQLKH 501

>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 110 TRDDVNSEGSLSTEVDRYEWDVNVIVIVILTGHHNIQMAPIRGHLHLG 253
           TR  V   G  S        D++++ + I  GH  + +A +RG  HLG
Sbjct: 256 TRQSVEEVGQAS--------DIDILAVAIKGGHACVNLAMVRGGRHLG 295

>GCH1_NEUCR (P51599) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 313

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 86  LSSFWKDGTRDDVNSEGSLSTEVDRYEWDVNVIVIVILTGHHNIQMAPIRGHLHLGHLPG 265
           L+  +++  RD VN  G++  E       V  I +  +  HH   + P  G +H+G++P 
Sbjct: 166 LTKGYQENVRDIVN--GAIFQEGHNEMVIVKDIEVFSMCEHH---LVPFTGKMHIGYIPS 220

Query: 266 N 268
           N
Sbjct: 221 N 221

>GCH1_XYLFA (Q9PC02) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 203

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 98  WKDGTRDDVNSEGSLS-TEVDRYEWDVNVIVIVILTGHHNIQMAPIRGHLHLGHLP 262
           W  G R+D +     +  E+  Y+ ++ V+  +    H    MAPI G +H+G+LP
Sbjct: 50  WFSGYREDPHDYLQRTFEEISGYD-ELIVLRNITYESHCEHHMAPIIGKVHIGYLP 104

>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
            (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
            morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
 Frame = +2

Query: 155  DRYEWDVNV----IVIVILTGHHNIQMAPIRGHLHLGHLPGN--IDHLPVQPILV 301
            D+Y+ +V+     + +    GH N   + I  +LH+G+LP +  I   P QPI+V
Sbjct: 2012 DQYDREVDCPKLQVEVFASLGHRN-PSSTIHQNLHIGNLPSSLLIHQNPFQPIIV 2065

>YCAI_ECOLI (P37443) Hypothetical protein ycaI|
          Length = 754

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 267 LPGRWPRWRCPRIGAI 220
           LPGRW  W+ P IG I
Sbjct: 250 LPGRWIHWQIPLIGGI 265

>RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) (PabRFC small subunit)
           [Contains: Pab RFC-1 intein; Pab RFC-2 intein]
          Length = 1437

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 24  FKPQLSLQYNNNYYCIKELKHYLRSGKMGH 113
           ++PQ   +     + +K LKHY+++G M H
Sbjct: 21  YRPQKLEEIVGQEHIVKRLKHYVKTGSMPH 50

>RFCS_PYRHO (O57852) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) [Contains: Pho RFC intein]
          Length = 855

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 24  FKPQLSLQYNNNYYCIKELKHYLRSGKMGH 113
           ++PQ   +     + +K LKHY+++G M H
Sbjct: 21  YRPQRLDEIVGQEHIVKRLKHYVKTGSMPH 50

>KCNK2_HUMAN (O95069) Potassium channel subfamily K member 2 (Outward rectifying|
           potassium channel protein TREK-1) (TREK-1 K(+) channel
           subunit) (Two-pore potassium channel TPKC1)
          Length = 426

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 197 LTGHHNIQMAPIRGHLHLGHLPGNIDHLP 283
           L G+HN ++ P R  L + HL    D LP
Sbjct: 369 LAGNHNQELTPCRRTLSVNHLTSERDVLP 397

>EFP2_LACAC (Q5FJG2) Elongation factor P 2 (EF-P 2)|
          Length = 189

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +3

Query: 24  FKPQLSLQYNNNYYCIKELKHYLRSGK----MGHEMMSIQRGACQ 146
           FK  L++QYNN+ + I E +H ++ GK    +  ++ S++ GA Q
Sbjct: 9   FKNGLTIQYNNDLWRIVEFQH-VKPGKGSAFVRSKLKSLRTGAVQ 52

>DPH2_YARLI (Q6CGE7) Diphthamide biosynthesis protein 2|
          Length = 481

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 39  SLQYNNNYYCIKELKHYLRSGKMGHEMMSI 128
           S  Y N YYC+ +L  YL S    HE  SI
Sbjct: 25  SNDYLNKYYCLPQLTEYLNS----HEYKSI 50

>XERD_RICPR (Q9ZDG8) Tyrosine recombinase xerD|
          Length = 311

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 164 EWDVNVIVIVILTGHHNIQMAPIRGHLHLGHLPGNIDHLPV 286
           E   ++ VI  L GH +I    I  HLH  HL   + H P+
Sbjct: 263 EGGADLRVIQELLGHADISTTQIYTHLHTNHLKKALLHHPL 303

>GCH1_XYLFT (Q87D63) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 203

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 98  WKDGTRDDVNSEGSLSTEVDRYEWDVNVIVIVILTGHHNIQMAPIRGHLHLGHLP 262
           W  G R+D +     + E      ++ V+  +    H    MAPI G +H+G+LP
Sbjct: 50  WFSGYREDPHDYLQRTFEEISCYDEMIVLRNITYESHCEHHMAPIIGKVHVGYLP 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,349,422
Number of Sequences: 219361
Number of extensions: 707511
Number of successful extensions: 2413
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2412
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)