>YBJD_ECOLI (P75828) Hypothetical protein ybjD|
          Length = 552

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -2

Query: 266 PTQITKTDTSNVHRQTRPDMSVDMDVEAGHPTVTKCPPLVR 144
           P  + K  +  +HR ++PD+++++ +EAG   V   P L++
Sbjct: 497 PMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLK 537

>YL263_MIMIV (Q5UP20) Hypothetical protein L263|
          Length = 583

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = -3

Query: 253 PRRTHQMSIGRHVQTCLWIWMWKPAIQQSLNVRLWSGLLHLTCIYQYHFKHMFNCCKHMQ 74
           P+  H + I     +  +I +WK  + +     +W     L  I   H+  M+NC K  Q
Sbjct: 317 PKHLHHIWIDEE-PSINYINLWKTILVEPWKYTIWDNNSVLDLIKDTHWDQMYNCAK--Q 373

Query: 73  SQTKNIICSM 44
           S+ K +I  +
Sbjct: 374 SRQKQLIAML 383

>ISPG_SYNEL (Q8DK70) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC|
           1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase)
          Length = 402

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 269 SPTQITKTDTSNVHRQTRPDMSVDMDVEAGHPTVTK 162
           SP Q T T+T+ V R+TRP     + +  GHP   +
Sbjct: 6   SPVQATPTETAIVRRKTRPVPIGSVVIGGGHPVAVQ 41

>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = -2

Query: 281 QLRVSPTQITKTDTSNVHRQTR--PDMSVDMDVEAGHPTVTKCPP------LVRPPPFDM 126
           QL  SP++    + +   R     P +S +  V+  HPT T  PP      + RP P   
Sbjct: 488 QLPESPSRAPPLEDTEEERGVTMDPPVSEERSVQQSHPTTTTSPPRPYPELISRPSPPTF 547

Query: 125 HISIP 111
           H  +P
Sbjct: 548 HRFLP 552

>WHRN_HUMAN (Q9P202) Whirlin (Autosomal recessive deafness type 31 protein)|
          Length = 907

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 215 PDMSVDMDVEAGHPTVTKCPPLVRPPPFDMHISIPL 108
           PD+SVD DV +    ++   PL RPPP      +PL
Sbjct: 562 PDVSVD-DVRSTSQGLSSFKPLPRPPPLAQGNDLPL 596

>TNP3_ECOLI (P03008) Transposase for transposon Tn3|
          Length = 1015

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 265 QRRSPRRTHQMSIGRHVQTCLWIWMWKPAIQQSLNVRLW 149
           QR + RR H   I +H Q   + W W   + + L  R W
Sbjct: 108 QRENTRREHAALIRQHYQYREFAWPWTFRLTRLLYTRSW 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,047,341
Number of Sequences: 219361
Number of extensions: 1025702
Number of successful extensions: 2483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2483
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)