ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479412.1| Oryza sativa (japonica cultivar-group), mRNA 90 5e-15
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
3dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
4dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 90 5e-15
5dbj|AK063537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 5e-15
6gb|AC125047.5| Mus musculus BAC clone RP23-354G14 from chromosom... 46 0.066
7gb|AC116839.8| Mus musculus chromosome 8, clone RP24-390L13, com... 44 0.26
8emb|BX072554.8| Zebrafish DNA sequence from clone DKEY-61M24 in ... 44 0.26
9emb|AL844487.3| Mouse DNA sequence from clone RP23-162L23 on chr... 44 0.26
10gb|AC154425.2| Mus musculus BAC clone RP24-196O13 from chromosom... 42 1.0
11emb|AL512451.7| Human DNA sequence from clone RP11-401G10 on chr... 42 1.0
12gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, com... 42 1.0
13gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, co... 40 4.1
14gb|AC162892.7| Mus musculus chromosome 5, clone RP23-257D19, com... 40 4.1
15gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, c... 40 4.1
16gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, comple... 40 4.1
17emb|AL512288.19| Human DNA sequence from clone RP11-460I13 on ch... 40 4.1
18gb|AC069021.9| Homo sapiens chromosome 10 clone RP11-254K3, comp... 40 4.1
19gb|AC157019.8| Mus musculus 10 BAC RP24-377N13 (Roswell Park Can... 40 4.1
20emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in ... 40 4.1
21emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in... 40 4.1
22gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Ca... 40 4.1
23emb|BX005330.13| Zebrafish DNA sequence from clone CH211-113D13,... 40 4.1
24emb|BX883050.1| Rattus norvegicus chromosome 20, major histocomp... 40 4.1
25gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosom... 40 4.1
26gb|AC022522.2|AC022522 Arabidopsis thaliana chromosome I BAC T28... 40 4.1
27emb|BX510941.5| Zebrafish DNA sequence from clone DKEY-155D18 in... 40 4.1
28gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 ... 40 4.1
29gb|AC122908.4| Mus musculus BAC clone RP23-51D10 from 1, complet... 40 4.1
30emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chr... 40 4.1 
>ref|XM_479412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1936

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 87   tgagatgaaccttcttaaag-accccaacggaaattttcttctattagaccacaaaactg 145
            |||||||||| ||||||||  | |||||| ||||| ||||||||||||| ||||||||| 
Sbjct: 1847 tgagatgaactttcttaaaacatcccaactgaaatattcttctattagatcacaaaact- 1789

                                             
Query: 146  gaccgacaaaattttctgagactcttcctcttg 178
            ||||||||||||||||| |||||||||||||||
Sbjct: 1788 gaccgacaaaattttct-agactcttcctcttg 1757
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                            
Query: 87       tgagatgaaccttcttaaag-accccaacggaaattttcttctattagaccacaaaactg 145
                |||||||||| ||||||||  | |||||| ||||| ||||||||||||| ||||||||| 
Sbjct: 27772455 tgagatgaactttcttaaaacatcccaactgaaatattcttctattagatcacaaaact- 27772513

                                                 
Query: 146      gaccgacaaaattttctgagactcttcctcttg 178
                ||||||||||||||||| |||||||||||||||
Sbjct: 27772514 gaccgacaaaattttct-agactcttcctcttg 27772545
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496C02
          Length = 148419

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                         
Query: 87    tgagatgaaccttcttaaag-accccaacggaaattttcttctattagaccacaaaactg 145
             |||||||||| ||||||||  | |||||| ||||| ||||||||||||| ||||||||| 
Sbjct: 64834 tgagatgaactttcttaaaacatcccaactgaaatattcttctattagatcacaaaact- 64892

                                              
Query: 146   gaccgacaaaattttctgagactcttcctcttg 178
             ||||||||||||||||| |||||||||||||||
Sbjct: 64893 gaccgacaaaattttct-agactcttcctcttg 64924
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1477_F01
          Length = 158792

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                          
Query: 87     tgagatgaaccttcttaaag-accccaacggaaattttcttctattagaccacaaaactg 145
              |||||||||| ||||||||  | |||||| ||||| ||||||||||||| ||||||||| 
Sbjct: 151557 tgagatgaactttcttaaaacatcccaactgaaatattcttctattagatcacaaaact- 151615

                                               
Query: 146    gaccgacaaaattttctgagactcttcctcttg 178
              ||||||||||||||||| |||||||||||||||
Sbjct: 151616 gaccgacaaaattttct-agactcttcctcttg 151647
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>dbj|AK063537.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C02, full
            insert sequence
          Length = 1936

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 84/93 (90%), Gaps = 3/93 (3%)
 Strand = Plus / Minus

                                                                        
Query: 87   tgagatgaaccttcttaaag-accccaacggaaattttcttctattagaccacaaaactg 145
            |||||||||| ||||||||  | |||||| ||||| ||||||||||||| ||||||||| 
Sbjct: 1847 tgagatgaactttcttaaaacatcccaactgaaatattcttctattagatcacaaaact- 1789

                                             
Query: 146  gaccgacaaaattttctgagactcttcctcttg 178
            ||||||||||||||||| |||||||||||||||
Sbjct: 1788 gaccgacaaaattttct-agactcttcctcttg 1757
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>gb|AC125047.5| Mus musculus BAC clone RP23-354G14 from chromosome 3, complete sequence
          Length = 200566

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 9     taaaccaaattttcattatatataaat 35
             ||||||||||| |||||||||||||||
Sbjct: 86103 taaaccaaattatcattatatataaat 86129
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>gb|AC116839.8| Mus musculus chromosome 8, clone RP24-390L13, complete sequence
          Length = 142874

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 280   atattgacagcttattattttg 301
             ||||||||||||||||||||||
Sbjct: 65723 atattgacagcttattattttg 65702
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>emb|BX072554.8| Zebrafish DNA sequence from clone DKEY-61M24 in linkage group 7,
             complete sequence
          Length = 190879

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    tatatataaatgcactgtaaaa 46
             ||||||||||||||||||||||
Sbjct: 55574 tatatataaatgcactgtaaaa 55553
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>emb|AL844487.3| Mouse DNA sequence from clone RP23-162L23 on chromosome X, complete
             sequence
          Length = 221023

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 18    ttttcattatatataaatgcactgta 43
             ||||||||||||||| ||||||||||
Sbjct: 25728 ttttcattatatatagatgcactgta 25753
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>gb|AC154425.2| Mus musculus BAC clone RP24-196O13 from chromosome 16, complete
             sequence
          Length = 161700

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    attatatataaatgcactgta 43
             |||||||||||||||||||||
Sbjct: 92969 attatatataaatgcactgta 92989
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>emb|AL512451.7| Human DNA sequence from clone RP11-401G10 on chromosome 6, complete
             sequence
          Length = 59449

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   acatctgctgtttcttcagag 249
             |||||||||||||||||||||
Sbjct: 35804 acatctgctgtttcttcagag 35784
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>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence
          Length = 185193

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 226    ttcacatctgctgtttcttca 246
              |||||||||||||||||||||
Sbjct: 104201 ttcacatctgctgtttcttca 104181
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>gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, complete sequence
          Length = 188504

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 20     ttcattatatataaatgcactgta 43
              |||||||||| |||||||||||||
Sbjct: 150788 ttcattatatgtaaatgcactgta 150811
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>gb|AC162892.7| Mus musculus chromosome 5, clone RP23-257D19, complete sequence
          Length = 155647

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     aaattttcattatatataaa 34
              ||||||||||||||||||||
Sbjct: 146931 aaattttcattatatataaa 146912
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>gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, complete sequence
          Length = 196776

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  gcacagactccaagctgtga 269
            ||||||||||||||||||||
Sbjct: 6526 gcacagactccaagctgtga 6507
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>gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, complete sequence
          Length = 170072

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     aaattttcattatatataaa 34
              ||||||||||||||||||||
Sbjct: 145205 aaattttcattatatataaa 145224
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>emb|AL512288.19| Human DNA sequence from clone RP11-460I13 on chromosome 1 Contains the
             gene for acid sphingomyelinase-like phosphodiesterase
             (ASML3B), the gene for a novel protein (FLJ10307), two
             novel genes, the 3' end of the EYA3 gene for eyes absent
             homolog 3 (Drosophila) and an interferon-induced
             transmembrane protein pseudogene, complete sequence
          Length = 113117

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    accaaattttcattatatataaat 35
             ||||||||||||||| ||||||||
Sbjct: 22209 accaaattttcattaaatataaat 22186
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>gb|AC069021.9| Homo sapiens chromosome 10 clone RP11-254K3, complete sequence
          Length = 175464

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     tatatataaatgcactgtaaaaga 48
              ||||||||||| ||||||||||||
Sbjct: 169360 tatatataaattcactgtaaaaga 169383
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>gb|AC157019.8| Mus musculus 10 BAC RP24-377N13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 233155

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    attatatataaatgcactgtaaaa 46
             |||||| |||||||||||||||||
Sbjct: 84697 attatagataaatgcactgtaaaa 84674
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>emb|CR384100.8| Zebrafish DNA sequence from clone DKEYP-22H2 in linkage group 13,
             complete sequence
          Length = 172918

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   aagatattgacagcttatta 296
             ||||||||||||||||||||
Sbjct: 37020 aagatattgacagcttatta 37001
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>emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in linkage group 1,
              complete sequence
          Length = 221617

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gaactatagatcatttgttt 87
              ||||||||||||||||||||
Sbjct: 110479 gaactatagatcatttgttt 110460
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>gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 179759

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    aattttcattatatataaatgcac 39
             ||||||||||||| ||||||||||
Sbjct: 83737 aattttcattatagataaatgcac 83760
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>emb|BX005330.13| Zebrafish DNA sequence from clone CH211-113D13, complete sequence
          Length = 181197

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   aagatattgacagcttatta 296
             ||||||||||||||||||||
Sbjct: 83455 aagatattgacagcttatta 83436
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>emb|BX883050.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 9/11
          Length = 348879

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 20     ttcattatatataaatgcactgta 43
              |||||||||||||| |||||||||
Sbjct: 255135 ttcattatatataagtgcactgta 255112
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>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete
             sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   gcacagactccaagctgtga 269
             ||||||||||||||||||||
Sbjct: 55302 gcacagactccaagctgtga 55321
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>gb|AC022522.2|AC022522 Arabidopsis thaliana chromosome I BAC T28K15 genomic sequence, complete
             sequence
          Length = 88643

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 15    aaattttcattatatataaatgca 38
             |||||||||||||||| |||||||
Sbjct: 58097 aaattttcattatataaaaatgca 58120
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>emb|BX510941.5| Zebrafish DNA sequence from clone DKEY-155D18 in linkage group 20,
              complete sequence
          Length = 183212

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     atatataaatgcactgtaaa 45
              ||||||||||||||||||||
Sbjct: 168682 atatataaatgcactgtaaa 168701
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>gb|AC002131.1|F12F1 Arabidopsis thaliana chromosome 1 BAC F12F1 sequence, complete
           sequence
          Length = 123386

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 15  aaattttcattatatataaatgca 38
           |||||||||||||||| |||||||
Sbjct: 197 aaattttcattatataaaaatgca 220
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>gb|AC122908.4| Mus musculus BAC clone RP23-51D10 from 1, complete sequence
          Length = 208926

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tttgtttcagtgtcaggaat 219
             ||||||||||||||||||||
Sbjct: 59304 tttgtttcagtgtcaggaat 59285
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>emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chromosome 15, complete
            sequence
          Length = 217225

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 20   ttcattatatataaatgcactgta 43
            |||||||||| |||||||||||||
Sbjct: 5953 ttcattatatgtaaatgcactgta 5976


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,541,594
Number of Sequences: 3902068
Number of extensions: 4541594
Number of successful extensions: 96752
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96628
Number of HSP's gapped (non-prelim): 114
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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