ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF306829.1|AF306829 Triticum urartu clone 581 cytosolic acety... 64 3e-07
2gb|AF306824.1|AF306824 Triticum timopheevii subsp. armeniacum cl... 64 3e-07
3gb|AF306828.1|AF306828 Triticum turgidum subsp. dicoccoides clon... 58 2e-05
4gb|AF306827.1|AF306827 Triticum monococcum subsp. monococcum clo... 58 2e-05
5gb|AF306826.1|AF306826 Triticum timopheevii subsp. armeniacum cl... 48 0.015
6gb|AF306825.1|AF306825 Triticum timopheevii subsp. timopheevii c... 48 0.015
7gb|AC127898.6| Homo sapiens 12 BAC RP11-373K20 (Roswell Park Can... 42 0.95
8gb|AC079386.23| Homo sapiens 12 BAC RP11-12K13 (Roswell Park Can... 42 0.95
9gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, com... 40 3.7
10gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 3.7
11gb|AC121892.3| Mus musculus BAC clone RP24-155I11 from chromosom... 40 3.7
12gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, comple... 40 3.7
13gb|AC161149.6| Mus musculus BAC clone RP23-350B16 from chromosom... 40 3.7
14emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BA... 40 3.7
15gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, com... 40 3.7
16emb|BX004850.11| Zebrafish DNA sequence from clone CH211-51M24 i... 40 3.7
17gb|AC134607.5| Mus musculus BAC clone RP23-65J2 from chromosome ... 40 3.7
18gb|AC133168.3| Mus musculus BAC clone RP24-217I2 from 1, complet... 40 3.7
19emb|Z70781.1|CEF57A8 Caenorhabditis elegans Cosmid F57A8, comple... 40 3.7
20gb|AC160635.2| Mus musculus BAC clone RP23-396N20 from chromosom... 40 3.7

>gb|AF306829.1|AF306829 Triticum urartu clone 581 cytosolic acetyl-CoA carboxylase gene,
           partial cds
          Length = 1812

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagagg 204
           |||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 734 gttcaaattgaactgcaaaaacgtcttatatttagaaacagagg 691



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagaggg 205
           |||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 722 gttcaatttgaactacaaaaacgtcttatatttaggaacagaggg 766



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>gb|AF306824.1|AF306824 Triticum timopheevii subsp. armeniacum clone 453 cytosolic
           acetyl-CoA carboxylase gene, partial cds
          Length = 1812

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagagg 204
           |||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 734 gttcaaattgaactgcaaaaacgtcttatatttagaaacagagg 691



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagaggg 205
           |||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 722 gttcaatttgaactacaaaaacgtcttatatttaggaacagaggg 766



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>gb|AF306828.1|AF306828 Triticum turgidum subsp. dicoccoides clone 465 cytosolic acetyl-CoA
           carboxylase gene, partial cds
          Length = 1836

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagaggg 205
           |||||| |||||||||||||| |||||||| |||| |||||||||
Sbjct: 722 gttcaatttgaactacaaaaacgtcttatatttaggaacagaggg 766



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 161 gttcaaattgaactacaaaaatgtcttata 190
           |||||||||||||| |||||| ||||||||
Sbjct: 734 gttcaaattgaactgcaaaaacgtcttata 705



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>gb|AF306827.1|AF306827 Triticum monococcum subsp. monococcum clone 437 cytosolic
           acetyl-CoA carboxylase gene, partial cds
          Length = 1812

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagaggg 205
           |||||||||||||| |||||| |||||||| |||| |||||||||
Sbjct: 722 gttcaaattgaactgcaaaaacgtcttatatttaggaacagaggg 766



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 161 gttcaaattgaactacaaaaatgtcttatagttagaaacagagg 204
           |||||| ||||||| |||||| |||||||| |||||||||||||
Sbjct: 734 gttcaatttgaactgcaaaaacgtcttatatttagaaacagagg 691



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>gb|AF306826.1|AF306826 Triticum timopheevii subsp. armeniacum clone 506 cytosolic
           acetyl-CoA carboxylase gene, partial cds
          Length = 1797

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 169 tgaactacaaaaatgtcttatagttagaaacagagg 204
           ||||||||||||| |||||||| |||| ||||||||
Sbjct: 734 tgaactacaaaaacgtcttatatttaggaacagagg 699



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>gb|AF306825.1|AF306825 Triticum timopheevii subsp. timopheevii clone 513 cytosolic
           acetyl-CoA carboxylase gene, partial cds
          Length = 1796

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 169 tgaactacaaaaatgtcttatagttagaaacagagg 204
           ||||||||||||| |||||||| |||| ||||||||
Sbjct: 734 tgaactacaaaaacgtcttatatttaggaacagagg 699



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>gb|AC127898.6| Homo sapiens 12 BAC RP11-373K20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159557

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   tacaaaaatgtcttatagtta 194
             |||||||||||||||||||||
Sbjct: 82133 tacaaaaatgtcttatagtta 82113



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>gb|AC079386.23| Homo sapiens 12 BAC RP11-12K13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 154172

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  tacaaaaatgtcttatagtta 194
            |||||||||||||||||||||
Sbjct: 1141 tacaaaaatgtcttatagtta 1121



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>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence
          Length = 174156

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   cttatagttagaaacagagg 204
             ||||||||||||||||||||
Sbjct: 40147 cttatagttagaaacagagg 40128



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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    gcaatgtataaagacgcttt 156
              ||||||||||||||||||||
Sbjct: 393663 gcaatgtataaagacgcttt 393682



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>gb|AC121892.3| Mus musculus BAC clone RP24-155I11 from chromosome 1, complete sequence
          Length = 152888

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    cttatagttagaaacagagg 204
              ||||||||||||||||||||
Sbjct: 135247 cttatagttagaaacagagg 135228



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>gb|AC093889.2| Homo sapiens BAC clone RP11-671G14 from 7, complete sequence
          Length = 198453

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   aaaatgtcttatagttagaa 197
             ||||||||||||||||||||
Sbjct: 79176 aaaatgtcttatagttagaa 79157



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>gb|AC161149.6| Mus musculus BAC clone RP23-350B16 from chromosome 1, complete
            sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   attgtcacatagacaaattt 49
            ||||||||||||||||||||
Sbjct: 8228 attgtcacatagacaaattt 8209



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>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10
          Length = 87503

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 178   aaaatgtcttatagttagaaacagaggg 205
             ||||| ||||||| ||||||||||||||
Sbjct: 59547 aaaatatcttatatttagaaacagaggg 59520



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>gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, complete sequence
          Length = 177303

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   aaaatgtcttatagttagaa 197
             ||||||||||||||||||||
Sbjct: 20986 aaaatgtcttatagttagaa 21005



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>emb|BX004850.11| Zebrafish DNA sequence from clone CH211-51M24 in linkage group 19,
              complete sequence
          Length = 121375

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 175    acaaaaatgtcttatagttagaaa 198
              ||||||||||||||||||| ||||
Sbjct: 102776 acaaaaatgtcttatagtttgaaa 102799



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>gb|AC134607.5| Mus musculus BAC clone RP23-65J2 from chromosome 9, complete sequence
          Length = 230480

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    aaaatgtcttatagttagaa 197
              ||||||||||||||||||||
Sbjct: 214212 aaaatgtcttatagttagaa 214193



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>gb|AC133168.3| Mus musculus BAC clone RP24-217I2 from 1, complete sequence
          Length = 169783

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    attgtcacatagacaaattt 49
             ||||||||||||||||||||
Sbjct: 85190 attgtcacatagacaaattt 85171



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>emb|Z70781.1|CEF57A8 Caenorhabditis elegans Cosmid F57A8, complete sequence
          Length = 30894

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   tataaagacgctttttgtgttcaa 166
             |||| |||||||||||||||||||
Sbjct: 10279 tatatagacgctttttgtgttcaa 10256



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>gb|AC160635.2| Mus musculus BAC clone RP23-396N20 from chromosome 9, complete sequence
          Length = 207088

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    aaaatgtcttatagttagaa 197
              ||||||||||||||||||||
Sbjct: 180459 aaaatgtcttatagttagaa 180478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,399,674
Number of Sequences: 3902068
Number of extensions: 2399674
Number of successful extensions: 41928
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41896
Number of HSP's gapped (non-prelim): 32
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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