>ATS10_MOUSE (P58459) ADAMTS-10 (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 10)
           (ADAM-TS 10) (ADAM-TS10) (Fragment)
          Length = 450

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = -2

Query: 268 ERKF*KAREN*KDDENCHQ------EKLQGPMCPAPWCKLGLYRT*DWS 140
           +R+   A E   DD  C Q      E  QGPMCP  W  L      DWS
Sbjct: 258 QRRVSAAEEKALDDSACPQPRPPVLEACQGPMCPPEWATL------DWS 300

>LONH_METJA (Q58812) Putative protease La homolog (EC 3.4.21.-)|
          Length = 649

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 46  SKRLLPLSKLGATEDDCVLRNKETCRQFTWKYSNLKSDTS 165
           SK+L+   KL   + D  L NKE   QF+  YS +  D++
Sbjct: 512 SKKLVAEKKLPLPKKDIDLNNKEIYIQFSQSYSKIDGDSA 551

>SELA_DESBA (P56372) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)|
           (Cysteinyl-tRNA(Sec) selenium transferase)
           (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec)
           synthase)
          Length = 465

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 17  ILGE*QPLTTANGCYHYQNLELQRTTVCSGTK 112
           IL E   L  A GC HY NLE+   T   G++
Sbjct: 98  ILAEEAVLAVAEGCRHYSNLEMDLDTGQRGSR 129

>Y904_TREPA (O83874) Hypothetical protein TP0904|
          Length = 83

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = +1

Query: 175 TRERGT-SALAIFLGDSFHRPSS-----FPLLFKIFSLYKERIDHHTPPLFLQPFRITC 333
           T+++GT +AL +FL   ++R S+      PLL  +FS+ +  + H T  + L+     C
Sbjct: 5   TQDKGTPAALQVFLLPQYNRYSAEMTRHVPLLCNLFSMSRYVLRHLTAQIILERMSAAC 63

>UVRC_VIBCH (Q9KSP2) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 610

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 175 TRERGTSALAIFLGDSFHRPSSFPLLFKIFSLYKERIDH 291
           TR+ G   L    GD FH PS  P L  I  +  E  +H
Sbjct: 502 TRKPGLETLITIDGDEFHLPSDAPALHLIQHIRDESHNH 540

>ZN202_HUMAN (O95125) Zinc finger protein 202|
          Length = 648

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 21  WVSNSRSPQQTAATTIKTWSYRGRLCAQEQRDL--QTVHMEILQS*VRYKPNLHQ 179
           WV + + PQ+T    I +++Y G     E+  L  + + +E +   V  +P +HQ
Sbjct: 296 WVPDIQEPQETQEPEILSFTYTGDRSKDEEECLEQEDLSLEDIHRPVLGEPEIHQ 350

>UVRC_VIBVY (Q7MM39) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 610

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 175 TRERGTSALAIFLGDSFHRPSSFPLLFKIFSLYKERIDH 291
           TR+ G   L    GD FH PS  P L  I  +  E  +H
Sbjct: 502 TRKPGLETLITVDGDEFHLPSDDPALHLIQHIRDESHNH 540

>UVRC_VIBVU (Q8D8C7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 610

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 175 TRERGTSALAIFLGDSFHRPSSFPLLFKIFSLYKERIDH 291
           TR+ G   L    GD FH PS  P L  I  +  E  +H
Sbjct: 502 TRKPGLETLITVDGDEFHLPSDDPALHLIQHIRDESHNH 540

>YHJ5_YEAST (P38769) Hypothetical 72.3 kDa protein in SLT2-PUT2 intergenic|
           region
          Length = 630

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 73  LGATEDDCVLRNKETCRQFTWKYSNLKSD 159
           + A++D C+      C+ F W YS+LK D
Sbjct: 497 INASKDTCL----SLCKPFIWSYSDLKHD 521


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,997,303
Number of Sequences: 219361
Number of extensions: 926517
Number of successful extensions: 1973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1973
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)