ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14f07 |
|---|---|
| Clone Library Name | barley_pub |
>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)| Length = 1591 Score = 30.8 bits (68), Expect = 0.84 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 82 GTEQLSRLQQPHAADPPRSQHNKVHTAHRSHT 177 G+ QLS L Q H D + + +H+ H SH+ Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 30.8 bits (68), Expect = 0.84 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 88 EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 177 +Q S+LQ PH+ PP QH + H H+ T Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435
>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB| Length = 539 Score = 29.6 bits (65), Expect = 1.9 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +1 Query: 94 LSRLQQPHAADPPRSQHNK 150 L R+ +PHA+DPPR H++ Sbjct: 468 LERMSRPHASDPPRPWHDR 486
>SIN1_SCHPO (Q9P7Y9) Stress-activated map kinase-interacting protein 1| (SAPK-interacting protein 1) Length = 665 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%) Frame = +1 Query: 97 SRLQQPHAADPPRSQH--------NKVHTAHRSHTNKSSQQFIGKLRDTLS 225 +++++ AA P +S+H NK H H S T+ SQ+ ++DTL+ Sbjct: 386 AQIKENQAAYPFKSKHPTSIPEANNKTHIRHTSSTSSQSQKQAQDVKDTLN 436
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%) Frame = +1 Query: 88 EQLSRLQQPHAADPPRSQ--HNKVHTAHRSHTNKSSQQFIGKL-----RDTLSRYLGIY 243 + +S+ QQP + PP+ Q K + + +S + FIG L D L Y G Y Sbjct: 124 QTMSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKY 182
>Y3539_METJA (Q60294) Hypothetical UPF0252 protein MJECL39| Length = 351 Score = 28.9 bits (63), Expect = 3.2 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%) Frame = -1 Query: 277 ELSNTYLSISIYICLNNE-TVCPVVCL*TAVKTCWCD--FCVR-------CELYYVVTVV 128 E SN Y I+ +I + + P V L WC+ FC+ C LY+++T++ Sbjct: 51 EKSNVYYFITFFIIVGLVWAIFPEVWL-------WCEQVFCISPTIHIIICCLYFIITII 103 Query: 127 GQLRVVAVIG----LVALFLLFNYCEWK 56 L + V+G L A F + C+ K Sbjct: 104 LFLFLCGVVGTFLHLWATFFTLSKCDSK 131
>PMEU1_LYCES (Q43143) Pectinesterase U1 precursor (EC 3.1.1.11) (Pectin| methylesterase) (PE) Length = 583 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 172 DFCVRCELYYVVTVVGQLRVVAVIGLVA 89 DFC R + Y+ V L V AVIG+VA Sbjct: 13 DFCKRKKKIYLAIVASVLLVAAVIGVVA 40
>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC| 2.7.11.1) Length = 620 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +1 Query: 94 LSRLQQPHA-ADPPRSQHNKVHTAHRSHTNKSSQQ 195 +S QP A AD + QHN H H H N++ Q Sbjct: 1 MSEQAQPQASADQQQHQHNHHHHHHHHHHNENQSQ 35
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 88 EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 177 +Q S+LQ PH P QH + H H+ T Sbjct: 405 QQHSQLQSPHPQHPSPHQHIQHHPNHQHQT 434
>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3018 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +1 Query: 52 RSSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVHTAHRSHTNKSSQQFIGKLRDTL 222 R+ST ++ ++ TE+ L PH+A RS++ RSHT+K+ + D L Sbjct: 2501 RASTVHARLLSTEEACSLTPPHSA---RSRYGYGARDVRSHTSKAVKHIDSVWEDLL 2554
>FBW1A_HUMAN (Q9Y297) F-box/WD-repeat protein 1A (F-box and WD-repeats protein| beta-TrCP) (E3RSIkappaB) (pIkappaBalpha-E3 receptor subunit) Length = 605 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = -1 Query: 307 PGRRRTSEDRELSNTYLSISIYICLNNETVCPVVCL*TAVKTCWC 173 P R+ E L TY S + +CLN ETVC TA+KT C Sbjct: 65 PPRKIIPEKNSLRQTYNSCA-RLCLNQETVCLAS---TAMKTENC 105
>YJCS_ECOLI (P32717) Hypothetical protein yjcS| Length = 661 Score = 27.3 bits (59), Expect = 9.3 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 178 NKSSQQFIGKLRDTLSRYLGIYK*I*INRCSRAHD--LHLSFFSLAMRSITARLMLPPFL 351 NK +IGK RDT+ +Y+ HD LHL+ M I + LPP L Sbjct: 362 NKHINDYIGKYRDTI-KYI--------------HDQTLHLANQGYTMNEIGDMIKLPPAL 406 Query: 352 ASS 360 A++ Sbjct: 407 ANN 409
>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)| Length = 129 Score = 27.3 bits (59), Expect = 9.3 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Frame = +1 Query: 49 HRSSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVH--------TAHRSHTNKSSQQFIG 204 H SS H S Q PH PPR Q + H T H K+ + F G Sbjct: 56 HSSSGHQS-----------QSPHPTLPPRHQKHTRHSHHCPPRPTTHSCSYPKNRKNFEG 104 Query: 205 KL--RDTLSRYLGIYK 246 K+ R + R +YK Sbjct: 105 KVNKRKVVKRSQQVYK 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,760,108 Number of Sequences: 219361 Number of extensions: 895694 Number of successful extensions: 2287 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2235 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2284 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
