>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9|
           (Pseudo-response regulator 9)
          Length = 468

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 383 PTRKKNSANLYRHMWASMSRRSPPAKMATSAP 288
           P RK    NL++H+W  ++ R  P   A S P
Sbjct: 142 PMRKNELKNLWQHVWRRLTLRDDPTAHAQSLP 173

>RPC2_MOUSE (P59470) DNA-directed RNA polymerase III subunit 127.6 kDa|
           polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2)
           (RPC2)
          Length = 1133

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 379 LERKTQQTCTGICGQVCQGVARRPKWRH 296
           L+R T QT   + G +     R+P WRH
Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806

>RPC2_HUMAN (Q9NW08) DNA-directed RNA polymerase III subunit 127.6 kDa|
           polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2)
           (RPC2)
          Length = 1133

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 379 LERKTQQTCTGICGQVCQGVARRPKWRH 296
           L+R T QT   + G +     R+P WRH
Sbjct: 779 LKRYTNQTFDKVMGPMLDAATRKPIWRH 806

>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1|
          Length = 363

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 266 CRTRHKKQAQMSPFWPAGYALTYLPT 343
           CR RHKK     P  P+G   T LP+
Sbjct: 270 CRARHKKHTPQHPVPPSGAPPTRLPS 295

>GATE_HALSA (Q9HQ32) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)|
           (Glu-ADT subunit E)
          Length = 622

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
 Frame = +1

Query: 46  NTPCVHEEDDRPTHVFCITYIYLPLQ-----------KVHVSNGVVVQKKKTMMIQHSAT 192
           +T C+ EEDD P H      +   L+           + HV   VV+    T   Q S  
Sbjct: 79  DTTCLVEEDDEPPHRLDEDALAAALEIGHLLGMDAVDRAHVMRKVVIDGSNTGGFQRSTM 138

Query: 193 FAQGA*NRTKRNP 231
            A+G    T   P
Sbjct: 139 VAEGGAIDTSEGP 151

>GRIK1_MOUSE (Q60934) Glutamate receptor, ionotropic kainate 1 precursor|
           (Glutamate receptor 5) (GluR-5) (GluR5)
          Length = 836

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 392 STCPTRKKNSANLYRHMWASMSRRSPPA 309
           ST    KK+  + Y  MWA MS R P A
Sbjct: 689 STMTFFKKSKISTYEKMWAFMSSRQPSA 716

>YPL2_CAEEL (O44440) Protein yippee-like B0546.4|
          Length = 161

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -2

Query: 380 TRKKNSANLYRHMWASMSRRSPPAKMATS----APVFCASCDRKIG 255
           T     A L++  W  +  R    KM T       VFC +C++K+G
Sbjct: 37  TGSTGPATLFKRAWNVVYGRCEHRKMTTGWHTVRDVFCVTCNQKLG 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,659,945
Number of Sequences: 219361
Number of extensions: 924313
Number of successful extensions: 2520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2519
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)