ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14f04 |
|---|---|
| Clone Library Name | barley_pub |
>SCD5_YEAST (P34758) Protein SCD5 (Protein FTB1)| Length = 872 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Frame = +2 Query: 29 TVDKKVRFEDSNKS*LNHIQTGWVSVPYPTMQQHYVSHLLA----FPDPTTRQIIVKTSH 196 T VR + N + ++ P T+ QH SHLL+ P Q+I + Sbjct: 568 TYSNNVRINNGNIVSMPKVEITGAFPPQNTLPQHQQSHLLSPQNTIPQHQRSQLISPQNT 627 Query: 197 FNTGRPTMQPQ 229 F +P + PQ Sbjct: 628 FTQNQPILSPQ 638
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = -1 Query: 268 VPLSLSLHLGFTYLRLHGRAPCIKVTCLHYNL--PSRWIWKSKQMGYVVLLHSG 113 V L L L LG T L HG+ +V+C+H L P+ WK ++ + + H+G Sbjct: 5 VDLRLLLLLGATALLTHGQEDIPEVSCIHNGLRVPNGETWK-PEVCLICICHNG 57
>DHSB_CHOCR (P48932) Succinate dehydrogenase [ubiquinone] iron-sulfur protein| (EC 1.3.5.1) (IP) Length = 250 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Frame = -1 Query: 322 FLAKSKLNERWLEATCRSVPLSL--SLHLGFTYLRLHGRAPCIKVTCLHYNLPSRWIWKS 149 F A+ KL + WL + SL +L L L G CI C + PS W + Sbjct: 125 FYAQYKLIKPWL---INKIGFSLKENLQSKIDRLELDGLYECILCACCSASCPSYWWNQD 181 Query: 148 KQMGYVVLLHS 116 K +G +LL + Sbjct: 182 KYLGPAILLQA 192
>LPXB_BLOFL (Q7VRD3) Lipid-A-disaccharide synthase (EC 2.4.1.182)| Length = 384 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = -1 Query: 274 RSVPLSLSLHLGFTY----LRLHGRAPCIKVTCLHYNLPSRWIWKSKQM 140 R + L L++ +G + + L R +T +HY PS W W+S ++ Sbjct: 85 RFLKLKLNIFIGIDFPDFNISLEKRLKKYGITTIHYVSPSIWAWRSNRV 133
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 268 VPLSLSLHLGFTYLRLHGRAPCIKVTCLHYNL--PSRWIWKSKQMGYVVLLHSG 113 V L L L LG T L HG+ +V+C+H L P+ WK + + + H+G Sbjct: 5 VDLRLLLLLGATALLTHGQEDIPEVSCIHNGLRVPNGETWK-PDVCLICICHNG 57
>DHSB_CYACA (P48933) Succinate dehydrogenase [ubiquinone] iron-sulfur protein| (EC 1.3.5.1) (IP) Length = 262 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/69 (27%), Positives = 28/69 (40%) Frame = -1 Query: 322 FLAKSKLNERWLEATCRSVPLSLSLHLGFTYLRLHGRAPCIKVTCLHYNLPSRWIWKSKQ 143 F A+ +L + WL+++ L L G CI C + PS W K Sbjct: 125 FYAQYRLIQPWLQSSLNIKSKKEIYQSKQDRLYLDGLYECILCACCSASCPSYWWNHDKY 184 Query: 142 MGYVVLLHS 116 +G VLL + Sbjct: 185 LGPAVLLQA 193
>FOXA_YEREN (Q01674) Ferrioxamine receptor precursor| Length = 710 Score = 27.7 bits (60), Expect = 7.3 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Frame = -1 Query: 322 FLAKSKLNERWLEATCRS-VPLSLSLHLGFTYLRLH---------GRAPCIKVTCLHYNL 173 ++ K+N + LE RS + LS+ G+TY R+ G P + + N+ Sbjct: 556 YVPAGKVNSQGLELEARSQISDRLSVIAGYTYNRVKFKDAIDGNDGNTPVLAPS----NM 611 Query: 172 PSRWIWKSKQMGYVVLLHSGIRY 104 S +W + GY + + +GIRY Sbjct: 612 AS--LWAQYEAGYGINVGAGIRY 632
>SERA_SHIFL (P0A9T3) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Frame = -1 Query: 262 LSLSLHLGFTYLRLHGRAPCIKVTCLH-------YNLPSRWIWKSKQMGYVVL 125 +SL LH G + +H P + +T L+ N+ ++++ S QMGYVV+ Sbjct: 329 VSLPLHGGRRLMHIHENRPGV-LTALNKIFAEQGVNIAAQYLQTSAQMGYVVI 380
>SERA_ECOLI (P0A9T0) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Frame = -1 Query: 262 LSLSLHLGFTYLRLHGRAPCIKVTCLH-------YNLPSRWIWKSKQMGYVVL 125 +SL LH G + +H P + +T L+ N+ ++++ S QMGYVV+ Sbjct: 329 VSLPLHGGRRLMHIHENRPGV-LTALNKIFAEQGVNIAAQYLQTSAQMGYVVI 380
>SERA_ECOL6 (P0A9T1) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Frame = -1 Query: 262 LSLSLHLGFTYLRLHGRAPCIKVTCLH-------YNLPSRWIWKSKQMGYVVL 125 +SL LH G + +H P + +T L+ N+ ++++ S QMGYVV+ Sbjct: 329 VSLPLHGGRRLMHIHENRPGV-LTALNKIFAEQGVNIAAQYLQTSAQMGYVVI 380
>SERA_ECO57 (P0A9T2) D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (PGDH)| Length = 409 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Frame = -1 Query: 262 LSLSLHLGFTYLRLHGRAPCIKVTCLH-------YNLPSRWIWKSKQMGYVVL 125 +SL LH G + +H P + +T L+ N+ ++++ S QMGYVV+ Sbjct: 329 VSLPLHGGRRLMHIHENRPGV-LTALNKIFAEQGVNIAAQYLQTSAQMGYVVI 380
>SPRL_BACCR (Q81IT2) Protein sprT-like| Length = 152 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -1 Query: 331 EIPFLAKSKLNERWLEATCRSVPLSLSLHLGFTYLRLHGR---APCIKVTCLHYNL 173 E+PFL K+ N R R + S ++ L + Y L+G IK HY+L Sbjct: 19 EMPFLHKAVFNNRLRTTGGRYLLKSHNIELNYRYYELYGEEELVGIIKHELCHYHL 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,881,889 Number of Sequences: 219361 Number of extensions: 1098985 Number of successful extensions: 2084 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2058 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2083 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
