ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, comp... 40 4.7
2emb|AL607042.10| Human DNA sequence from clone RP11-413G1 on chr... 40 4.7
3gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, comp... 40 4.7
4gb|AC158655.4| Mus musculus BAC RP23-406J21 (Roswell Park Cance... 40 4.7

>gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, complete sequence
          Length = 158568

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 64     caagtcctaattaaaccacatccaaacc 91
              ||||| |||||| |||||||||||||||
Sbjct: 132734 caagttctaatttaaccacatccaaacc 132761



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>emb|AL607042.10| Human DNA sequence from clone RP11-413G1 on chromosome 10, complete
             sequence
          Length = 53085

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 64    caagtcctaattaaaccacatccaaacc 91
             ||||| |||||| |||||||||||||||
Sbjct: 46700 caagttctaatttaaccacatccaaacc 46673



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>gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, complete sequence
          Length = 158559

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 64    caagtcctaattaaaccacatccaaacc 91
             ||||| |||||| |||||||||||||||
Sbjct: 25835 caagttctaatttaaccacatccaaacc 25808



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>gb|AC158655.4| Mus musculus  BAC RP23-406J21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201519

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    attaataaacagtagataaa 40
             ||||||||||||||||||||
Sbjct: 57113 attaataaacagtagataaa 57094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,808,949
Number of Sequences: 3902068
Number of extensions: 2808949
Number of successful extensions: 49802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49797
Number of HSP's gapped (non-prelim): 5
length of query: 352
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 330
effective length of database: 17,147,199,772
effective search space: 5658575924760
effective search space used: 5658575924760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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