ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PPNK1_PROMP (Q7V3C2) Probable inorganic polyphosphate/ATP-NAD ki... 31 0.82
2DC12_XENTR (Q6P7N4) UPF0361 protein DC12 homolog 30 1.8
3DC12_XENLA (Q6IND6) UPF0361 protein DC12 homolog 29 2.4
4YMR7_YEAST (Q04371) Protein YMR027W 28 5.3
5HM24_CAEEL (Q9NLC2) Homeobox protein ceh-24 27 9.1
6APJ_MACMU (O97666) Apelin receptor (G-protein coupled receptor A... 27 9.1
7YRRI_BACSU (O34472) Hypothetical UPF0118 protein yrrI 27 9.1

>PPNK1_PROMP (Q7V3C2) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 1)
          Length = 299

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = -1

Query: 138 RAVPLWKDGT-C-----RDY-QSSQQSLPCKMFPLNYSLSHY 34
           R + LWKDG+ C      DY + ++ + PCKM   N S+S+Y
Sbjct: 237 REIKLWKDGSKCMTIKENDYCEINKVTKPCKMIKFNKSISYY 278



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>DC12_XENTR (Q6P7N4) UPF0361 protein DC12 homolog|
          Length = 335

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 138 RAVPLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQ 31
           R  P W+DG    YQ S    P    P+  SL H+Q
Sbjct: 27  RKWPNWRDGDSDKYQPSYNKSPQSNSPVLLSLKHFQ 62



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>DC12_XENLA (Q6IND6) UPF0361 protein DC12 homolog|
          Length = 336

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 129 PLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQ 31
           P W+DG    YQ S    P    P+  SL H+Q
Sbjct: 30  PKWRDGDTDKYQPSYNKSPQSNNPVLLSLKHFQ 62



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>YMR7_YEAST (Q04371) Protein YMR027W|
          Length = 470

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 18  IHSLIDNGTKNNLEGTFYKGEIADWT--DNPCKFHPSTVELPLQSYNLIQLRTQSNYPRL 191
           +   + +G     E +F+  E+  W    N  K+H S +   LQ  NL+  +   NY +L
Sbjct: 331 MEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKL 390



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>HM24_CAEEL (Q9NLC2) Homeobox protein ceh-24|
          Length = 299

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 144 FARAVPLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQSMN 22
           ++ A P W +G    + ++   LPC + P+  +++H  SM+
Sbjct: 105 YSGAQPNWYNGNDPRFAAAAALLPCSIDPVRSAINHQFSMS 145



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>APJ_MACMU (O97666) Apelin receptor (G-protein coupled receptor APJ)|
           (Angiotensin receptor-like 1)
          Length = 380

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 177 WIGS*VGSDCSFARAVPLWKDGTCRDYQSSQQSLPCKMFPLNYSLSHYQSM 25
           +I S   +D +F   +PLW   T RDY     +  CK+      ++ Y S+
Sbjct: 67  FIASLAVADLTFVVTLPLWATYTYRDYDWPFGTFSCKLSSYLIFVNMYASV 117



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>YRRI_BACSU (O34472) Hypothetical UPF0118 protein yrrI|
          Length = 353

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = -2

Query: 287 PIITFRL*FGGEMVMMERDWVVGILAFLEPHYQSWVVGLGPELDQIVALQGQFHCGRMEL 108
           P++  +L    E + M  +   G+L  +  H   W  G+   +D+++     F  G +E 
Sbjct: 94  PVLIVQLTDLSENIPMFAETYNGLLLHVHNHTDDWPDGMHHRIDKMIRQTEAFFAGTIE- 152

Query: 107 AGIISPVSNL 78
            G IS + N+
Sbjct: 153 -GAISGIRNV 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,750,884
Number of Sequences: 219361
Number of extensions: 1069254
Number of successful extensions: 2627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2627
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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