ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 42 1.2
2gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, compl... 40 4.6
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.6
4gb|AC122333.2| Mus musculus BAC clone RP23-346J12 from chromosom... 40 4.6
5gb|AC007026.3| Homo sapiens PAC clone RP4-751G11 from 7, complet... 40 4.6
6gb|AC146185.2| Pan troglodytes BAC clone RP43-35O6 from 7, compl... 40 4.6
7emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segme... 40 4.6
8emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 i... 40 4.6
9gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
11emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chr... 40 4.6
12gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 40 4.6

>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 46      aaaaggcaatcaatccaccct 66
               |||||||||||||||||||||
Sbjct: 1909961 aaaaggcaatcaatccaccct 1909941



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>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence
          Length = 45765

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    aagcaaaagcttgtacttccaaca 111
             ||||||||||||||| ||||||||
Sbjct: 19889 aagcaaaagcttgtagttccaaca 19912



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 11      agatagatatatataagctg 30
               ||||||||||||||||||||
Sbjct: 2918728 agatagatatatataagctg 2918709



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>gb|AC122333.2| Mus musculus BAC clone RP23-346J12 from chromosome 6, complete sequence
          Length = 174665

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    aagcttgtacttccaacaac 113
             ||||||||||||||||||||
Sbjct: 89164 aagcttgtacttccaacaac 89183



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>gb|AC007026.3| Homo sapiens PAC clone RP4-751G11 from 7, complete sequence
          Length = 120809

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ttagcaagcaaaagcttgta 102
             ||||||||||||||||||||
Sbjct: 95744 ttagcaagcaaaagcttgta 95725



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>gb|AC146185.2| Pan troglodytes BAC clone RP43-35O6 from 7, complete sequence
          Length = 156598

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ttagcaagcaaaagcttgta 102
             ||||||||||||||||||||
Sbjct: 36773 ttagcaagcaaaagcttgta 36792



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>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7
          Length = 349544

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tatacaaaaaggcaatcaat 59
             ||||||||||||||||||||
Sbjct: 17246 tatacaaaaaggcaatcaat 17265



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>emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 in linkage group 17,
             complete sequence
          Length = 146938

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 307   atttccacagcttcacgtgcttgtcatg 334
             ||||||||||||||||||| ||| ||||
Sbjct: 38938 atttccacagcttcacgtggttgccatg 38965



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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    agatagatatatataagctg 30
             ||||||||||||||||||||
Sbjct: 56215 agatagatatatataagctg 56196



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 11      agatagatatatataagctg 30
               ||||||||||||||||||||
Sbjct: 2918839 agatagatatatataagctg 2918820



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>emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chromosome X, complete
              sequence
          Length = 190433

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      aaactcagatagatatatat 24
              ||||||||||||||||||||
Sbjct: 175912 aaactcagatagatatatat 175931



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>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 88    aagcaaaagcttgtacttccaaca 111
             ||||||||||||||| ||||||||
Sbjct: 89587 aagcaaaagcttgtagttccaaca 89564


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,746,995
Number of Sequences: 3902068
Number of extensions: 2746995
Number of successful extensions: 50885
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50818
Number of HSP's gapped (non-prelim): 67
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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