>ARODE_CHLMU (P56961) Shikimate biosynthesis protein aroDE [Includes:|
           3-dehydroquinate dehydratase (EC 4.2.1.10)
           (3-dehydroquinase) (Type I DHQase); Shikimate
           dehydrogenase (EC 1.1.1.25)]
          Length = 478

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 77  LHTSLHFHLTPI*TARLAATLSYFHTSVAPS 169
           LHTS H  +T + T  LA+++ Y+  +V+P+
Sbjct: 109 LHTSEHTDITQLYTQMLASSIDYYKLAVSPA 139

>JHD1B_XENLA (Q640I9) JmjC domain-containing histone demethylation protein 1B (EC|
            1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and
            leucine-rich repeat protein 10)
          Length = 1259

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 267  SSKPTPR*VLSPPTSLEPPVSQPRQRRVLHP 175
            S K TPR    PP SL PP     +R V+ P
Sbjct: 938  SLKTTPRANNRPPPSLSPPKCMQMERHVIRP 968

>DAPF_NEIMA (Q9JV69) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 283

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 250 KMSALSSDFLRASGITAETATGSPPIRGWSDRSMEIG 140
           KM  L +DF+    ++ +      PI  W+DR   +G
Sbjct: 8   KMHGLGNDFMVIDAVSQDFTPEDAPIAAWADRFRGVG 44

>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog|
          Length = 1260

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 38   EQGSNRSFVRMPQLHTSLHFHLTPI*TARLAATLSYFHTSVAPSPYGWRTRRCLGCDTGG 217
            ++ S+   +R  Q+ T+L +HLTP+  A         H + +P+   WR     GC   G
Sbjct: 1092 KKSSSSLIIREMQIKTTLRYHLTPVRVA---------HITKSPNQRCWR-----GCGGKG 1137

Query: 218  S 220
            +
Sbjct: 1138 T 1138

>CEP76_HUMAN (Q8TAP6) Centrosomal protein of 76 kDa (Cep76 protein)|
          Length = 659

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 309 WVAKCGEDNC*KHISSKPTPR*VLSPPTSLEPPVSQPRQRRVLHPY 172
           WV  CG D       S    R +  P    EPPV++  Q + L+PY
Sbjct: 410 WVMTCGTDGAITFWESLTGHRYIHKPTNPDEPPVAE--QPKPLYPY 453


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,025,546
Number of Sequences: 219361
Number of extensions: 882643
Number of successful extensions: 2265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2265
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)