>POLG_EBHSG (Q96725) Genome polyprotein [Contains: p16; p23; Helicase (2C-like|
           protein) (P2C); 3A-like protein; Viral genome-linked
           protein (VPg); Thiol protease P3C (EC 3.4.22.-);
           RNA-directed RNA polymerase (EC 2.7.7.48); Capsid
           protein VP60, subgenomic
          Length = 2334

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 27/94 (28%)
 Frame = -1

Query: 223 RCSDPL------VVLALHNCYLSETGDMLSLMDPTDLLYDIVSCLTDRACLLPFGVR--- 71
           + SDPL      +++ALHNC   +T  MLS   P +LL  ++    D    L   +R   
Sbjct: 261 KLSDPLKTLAAILLVALHNCVAVDTTTMLSHFKPVNLLAILLDWTNDLPGFLTTLIRFME 320

Query: 70  --------LNLGVN----------IAAQRCCMLL 23
                   +NL V+           A +RCC LL
Sbjct: 321 LYGVVQSTVNLVVDAIKSFWDRVMCATERCCDLL 354

>GLN3_YEAST (P18494) Nitrogen regulatory protein GLN3|
          Length = 730

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 18  NNNNMQQRWAAILTPKFRRTPKGSKQARSVRQLTISYKRSVGSIRESMSPVS 173
           N+NN+ +  +  +TP FRR+ + S  + +    + S  RSV  I    SP S
Sbjct: 460 NSNNLMRHNSNTVTPNFRRSSRRSSTSSNTSSSSKSSSRSVVPILPKPSPNS 511

>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)|
          Length = 1011

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 229 SGRCSDPLVVLALHNCYLSETGDMLSLMDPTD--LLYDIVSCLTDRACLLP 83
           S RC +P+V   + +C  S  G++   M P D  L +D + CL +   LLP
Sbjct: 353 SARCLEPMVACWVSSCPGSAEGNLQKFM-PLDQWLYFDALDCLPEDGELLP 402

>RPOL_KLULA (P05472) Probable DNA-directed RNA polymerase (EC 2.7.7.6) (Killer|
           plasmid PGKL2 protein 6)
          Length = 982

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 102 SVRQLTISYKRSVGSIRESMSPVSDK*QLCKARTTSGSL 218
           S+R++TI   RS   ++E     +DK ++C  +T+ GSL
Sbjct: 244 SIRRITIPSSRSNAPMKERRVEDNDKYKICPIQTSDGSL 282

>DRS1_YARLI (Q6CEB8) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 753

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 32  ATTLGGNINT*IQ---ANPKR*QTGSVSQAANYIIQEVCRIHKREHVTCFRQVTIVQSKD 202
           + T+  +I++ IQ   + P R       QAA+ ++QE  RI KR+H+      +I++  D
Sbjct: 437 SATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASILKKMD 496

>YIS3_YEAST (P40563) Protein YIR003W|
          Length = 679

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 317 SQGPPANDVGNRKATNEELLDATE 246
           SQ P  N VGNRKA +EE L  +E
Sbjct: 605 SQLPQTNAVGNRKAISEESLSPSE 628

>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)|
          Length = 1117

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +3

Query: 63   KFRRTPKGSKQARSVRQLTISYKRSVGSIRESMSPVSDK*QLCKARTT-SGSLHRPDFF* 239
            +  +  K SKQ  +  +   S+K S+  +  + +  +   Q+CK      GSL R     
Sbjct: 1016 RIAKVSKESKQELNEEEYVNSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIR----- 1070

Query: 240  STFRGIEELLVCRLSVADVVGGRTLRR 320
              FR +EEL+   +  A V+G  +L++
Sbjct: 1071 -MFRRLEELIRQMVDAAKVIGNTSLQQ 1096

>ADT_KLULA (P49382) ADP,ATP carrier protein (ADP/ATP translocase) (Adenine|
           nucleotide translocator) (ANT)
          Length = 305

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 145 P*ERACHLFQTSNNCAKQGQLAGRYTGLI 231
           P ER   L Q  +   KQG L  RYTG++
Sbjct: 30  PIERVKLLIQNQDEMIKQGSLDRRYTGIV 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,029,139
Number of Sequences: 219361
Number of extensions: 851347
Number of successful extensions: 1836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)