ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y145_MYCPN (P75141) Hypothetical UPF0134 protein MPN145 (E07_orf... 29 2.9
2IFC2_CAEEL (Q21067) Intermediate filament protein ifc-2 (Interme... 28 4.9
3DNJ49_ARATH (Q9FH28) Chaperone protein dnaJ 49 (AtJ49) (AtDjC49) 28 6.4
4SMC_METJA (Q59037) Chromosome partition protein smc homolog 28 6.4
5NTP1_YMTV (Q9QB93) Nucleoside triphosphatase I (EC 3.6.1.15) (Nu... 28 8.4

>Y145_MYCPN (P75141) Hypothetical UPF0134 protein MPN145 (E07_orf179)|
          Length = 179

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 225 EEISSLHKRLKTLEGDRDFLEHSINSLKN 139
           E + S+HKRL ++EG  D +E+ ++ L++
Sbjct: 150 ESLGSIHKRLDSMEGRLDSMENRLDKLES 178



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>IFC2_CAEEL (Q21067) Intermediate filament protein ifc-2 (Intermediate filament|
           protein C2) (IF-C2) (Cel IF C2)
          Length = 622

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 219 ISSLHKRLKTLEGDRDFLEHSINSLKNGKEGAQFVREIA 103
           ++++  RL  +EG   FLE  I+ LKN +E   F   +A
Sbjct: 313 VTNVRSRLAEVEGRNFFLERLIDDLKNNEEAKFFEISLA 351



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>DNJ49_ARATH (Q9FH28) Chaperone protein dnaJ 49 (AtJ49) (AtDjC49)|
          Length = 354

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 216 SSLHKRLKTLEGDRDFLEHSINSLKNGKEGAQFVREIACN 97
           SS+ ++LKT++GD D LE     +K  +E    VR I  N
Sbjct: 60  SSVSEKLKTMDGDDDKLE--TGKMKYTEENVDLVRNIIRN 97



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>SMC_METJA (Q59037) Chromosome partition protein smc homolog|
          Length = 1169

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -2

Query: 225 EEISSLHKRLKTL----EGDRDFLEHSINSLK 142
           EE+  LHK +K L    E D+  L+ SIN LK
Sbjct: 293 EEVLELHKSIKELEVEIENDKKVLDSSINELK 324



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>NTP1_YMTV (Q9QB93) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside|
           triphosphate phosphohydrolase I) (NPH I)
          Length = 631

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 7   RNLVHKEVLCEELGSTMLFVVNGHGSEFSEVAGN 108
           +NLV+++ L ++LG    ++VN   S F +V G+
Sbjct: 215 KNLVNEKELIDKLGGICSYIVNDEFSIFDDVEGS 248


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,690,093
Number of Sequences: 219361
Number of extensions: 518873
Number of successful extensions: 1507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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