ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 30 2.1
2FREM1_HUMAN (Q5H8C1) FRAS1-related extracellular matrix protein ... 29 3.7
3IMMC_ECOLI (P02986) Cloacin immunity protein 29 3.7
4Y1742_STRPN (Q97P99) UPF0348 protein SP1742 28 8.2
5Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587 28 8.2

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
           (High molecular weight salivary mucin MG1) (Sublingual
           gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 4   RMQFHSPARLSFNGWIRVHKWCSRVTNPHTSYITDSSTMN 123
           R  F  P  LS         WCSR+T+P++++    S +N
Sbjct: 602 RNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641



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>FREM1_HUMAN (Q5H8C1) FRAS1-related extracellular matrix protein 1 precursor|
           (QBRICK protein)
          Length = 2179

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 42  WVDQSSQMVFEGNQPPHKLHNRLKHDELLFKLYKF 146
           W D S   +    QPP+  H+  +HDE+  ++Y F
Sbjct: 360 WKDLSDMQI--AYQPPNSSHSERRHDEVELEVYDF 392



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>IMMC_ECOLI (P02986) Cloacin immunity protein|
          Length = 85

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 40  NGWIRVHKWCSRVTNPHTSYITDSSTMNYFLSSI 141
           NGW  V K    +  PH   + D S  +YF+S +
Sbjct: 46  NGWFDVEKPWVSILQPHFKNVIDISKFDYFVSFV 79



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>Y1742_STRPN (Q97P99) UPF0348 protein SP1742|
          Length = 365

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 3   PNAVSFPCKTELQWVDQSSQMVFEGNQPPHKL 98
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155



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>Y1587_STRR6 (Q8DNR1) UPF0348 protein spr1587|
          Length = 365

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 3   PNAVSFPCKTELQWVDQSSQMVFEGNQPPHKL 98
           P+++S+P KT+  W  + + + F GN P H L
Sbjct: 125 PDSLSYPQKTQAMW-KEFAGLDFSGNTPNHVL 155


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,770,155
Number of Sequences: 219361
Number of extensions: 389656
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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