ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_462657.1| Oryza sativa (japonica cultivar-group), predic... 100 7e-18
2dbj|AK060713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AK068842.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
5emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 58 2e-05
6gb|AC098858.3| Homo sapiens BAC clone RP11-149A7 from 4, complet... 44 0.35
7emb|AL450003.2|HS62F24 Homo sapiens chromosome 9 BAC RP11-62F24,... 44 0.35
8emb|AL805919.10| Mouse DNA sequence from clone RP23-395M3 on chr... 44 0.35
9gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome... 42 1.4
10dbj|AK141726.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 42 1.4
11gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC... 40 5.4
12gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, co... 40 5.4
13dbj|AK141330.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 5.4
14gb|BC114207.1| Mus musculus pregnancy-specific glycoprotein 29, ... 40 5.4
15gb|AC152074.3| Mus musculus BAC clone RP24-549B12 from chromosom... 40 5.4
16gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62... 40 5.4
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
18dbj|AB192877.1| Human enterovirus 90 genomic RNA, complete genome 40 5.4
19gb|AC108047.4| Homo sapiens BAC clone RP11-318K4 from 2, complet... 40 5.4
20emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, c... 40 5.4
21dbj|AP005805.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
22dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
23dbj|BS000056.1| Pan troglodytes chromosome 22 clone:RP43-138K13,... 40 5.4
24emb|AL672205.7| Mouse DNA sequence from clone RP23-149B17 on chr... 40 5.4
25gb|AC156271.5| Mus musculus 10 BAC RP24-317L8 (Roswell Park Canc... 40 5.4
26dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.4
27ref|NM_054064.1| Mus musculus pregnancy-specific glycoprotein 29... 40 5.4
28gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complet... 40 5.4
29dbj|AP000946.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 5.4 
>ref|XM_462657.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1884

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                        
Query: 314  cccctgcattcctcaagcttctgctgcagcctcacgttgtgccttaaacaatcagctatc 373
            ||||| || |||||||||||||||||||||||||| ||||| | |||||||||||| || 
Sbjct: 1880 cccctacactcctcaagcttctgctgcagcctcacattgtgacgtaaacaatcagcaatt 1821

                                          
Query: 374  tcttcctgtttcagaggcgggactacttca 403
            ||||||||||||||||| || |||| ||||
Sbjct: 1820 tcttcctgtttcagaggtggaactatttca 1791
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>dbj|AK060713.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C12, full
           insert sequence
          Length = 1344

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 80/90 (88%)
 Strand = Plus / Minus

                                                                       
Query: 314 cccctgcattcctcaagcttctgctgcagcctcacgttgtgccttaaacaatcagctatc 373
           ||||| || |||||||||||||||||||||||||| ||||| | |||||||||||| || 
Sbjct: 956 cccctacactcctcaagcttctgctgcagcctcacattgtgacgtaaacaatcagcaatt 897

                                         
Query: 374 tcttcctgtttcagaggcgggactacttca 403
           ||||||||||||||||| || |||| ||||
Sbjct: 896 tcttcctgtttcagaggtggaactatttca 867



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                      
Query: 75   gtattccttctgggaaaatga---agaaaaacctcaaccctcttttcagcagggaaaa 129
            |||||||||||||||||||||   |||||| | | || ||||||||||||||||||||
Sbjct: 1207 gtattccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 1150
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 314      cccctgcattcctcaagcttctgctgcagcctcacgttgtg 354
                ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 22320724 cccctacactcctcaagcttctgctgcagcctcacattgtg 22320684



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                          
Query: 75       gtattccttctgggaaaatga---agaaaaacctcaaccctcttttcagcagggaaaa 129
                |||||||||||||||||||||   |||||| | | || ||||||||||||||||||||
Sbjct: 22320975 gtattccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 22320918



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 356      cttaaacaatcagctatctcttcctgtttcagaggcgggactacttca 403
                |||| ||||||||| || ||||||||||||||||| || |||| ||||
Sbjct: 22319917 cttacacaatcagcaatttcttcctgtttcagaggtggaactatttca 22319870
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>dbj|AK068842.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162C23, full
            insert sequence
          Length = 3754

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 314  cccctgcattcctcaagcttctgctgcagcctcacgttgtg 354
            ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 3372 cccctacactcctcaagcttctgctgcagcctcacattgtg 3332



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                      
Query: 75   gtattccttctgggaaaatga---agaaaaacctcaaccctcttttcagcagggaaaa 129
            |||||||||||||||||||||   |||||| | | || ||||||||||||||||||||
Sbjct: 3623 gtattccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 3566



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 356  cttaaacaatcagctatctcttcctgtttcagaggcgggactacttca 403
            |||| ||||||||| || ||||||||||||||||| || |||| ||||
Sbjct: 2565 cttacacaatcagcaatttcttcctgtttcagaggtggaactatttca 2518
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 314   cccctgcattcctcaagcttctgctgcagcctcacgttgtg 354
             ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 71628 cccctacactcctcaagcttctgctgcagcctcacattgtg 71588



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                       
Query: 75    gtattccttctgggaaaatga---agaaaaacctcaaccctcttttcagcagggaaaa 129
             |||||||||||||||||||||   |||||| | | || ||||||||||||||||||||
Sbjct: 71879 gtattccttctgggaaaatgagggagaaaaccttaaaacctcttttcagcagggaaaa 71822



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 356   cttaaacaatcagctatctcttcctgtttcagaggcgggactacttca 403
             |||| ||||||||| || ||||||||||||||||| || |||| ||||
Sbjct: 70821 cttacacaatcagcaatttcttcctgtttcagaggtggaactatttca 70774
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>gb|AC098858.3| Homo sapiens BAC clone RP11-149A7 from 4, complete sequence
          Length = 172419

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 185   atttgttaagctagacacaacc 206
             ||||||||||||||||||||||
Sbjct: 30843 atttgttaagctagacacaacc 30864
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>emb|AL450003.2|HS62F24 Homo sapiens chromosome 9 BAC RP11-62F24, complete sequence
          Length = 160737

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 84     ctgggaaaatgaagaaaaacct 105
              ||||||||||||||||||||||
Sbjct: 132625 ctgggaaaatgaagaaaaacct 132646
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>emb|AL805919.10| Mouse DNA sequence from clone RP23-395M3 on chromosome 4, complete
             sequence
          Length = 199130

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 84    ctgggaaaatgaagaaaaacct 105
             ||||||||||||||||||||||
Sbjct: 76711 ctgggaaaatgaagaaaaacct 76732
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>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence
          Length = 199923

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 150    acccccacagagctgaagtta 170
              |||||||||||||||||||||
Sbjct: 119508 acccccacagagctgaagtta 119488
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>dbj|AK141726.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030044L12
            product:unclassifiable, full insert sequence
          Length = 1733

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 150  acccccacagagctgaagtta 170
            |||||||||||||||||||||
Sbjct: 1402 acccccacagagctgaagtta 1422
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>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence,
             complete sequence
          Length = 93478

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tctgggaaaatgaagaaaaa 102
             ||||||||||||||||||||
Sbjct: 69692 tctgggaaaatgaagaaaaa 69711
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>gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, complete sequence
          Length = 188788

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     cctctgtgtgcctccaacac 53
              ||||||||||||||||||||
Sbjct: 143662 cctctgtgtgcctccaacac 143681
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>dbj|AK141330.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430030O18 product:Cea17 protein
            (Fragment) homolog [Mus musculus], full insert sequence
          Length = 4479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  agcatgacaacccccacaga 160
            ||||||||||||||||||||
Sbjct: 3036 agcatgacaacccccacaga 3017
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>gb|BC114207.1| Mus musculus pregnancy-specific glycoprotein 29, mRNA (cDNA clone
            MGC:107527 IMAGE:30083585), complete cds
          Length = 5444

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  agcatgacaacccccacaga 160
            ||||||||||||||||||||
Sbjct: 3012 agcatgacaacccccacaga 2993
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>gb|AC152074.3| Mus musculus BAC clone RP24-549B12 from chromosome 7, complete sequence
          Length = 211098

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   agcatgacaacccccacaga 160
             ||||||||||||||||||||
Sbjct: 93007 agcatgacaacccccacaga 93026
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>gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62D2, complete sequence
          Length = 177762

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     cctctgtgtgcctccaacac 53
              ||||||||||||||||||||
Sbjct: 131396 cctctgtgtgcctccaacac 131415
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 312      agcccctgcattcctcaagc 331
                ||||||||||||||||||||
Sbjct: 11769202 agcccctgcattcctcaagc 11769221
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>dbj|AB192877.1| Human enterovirus 90 genomic RNA, complete genome
          Length = 7425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 tttgttaagctagacacaac 205
           ||||||||||||||||||||
Sbjct: 679 tttgttaagctagacacaac 698
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>gb|AC108047.4| Homo sapiens BAC clone RP11-318K4 from 2, complete sequence
          Length = 53196

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    gaaaatgaagaaaaacctca 107
             ||||||||||||||||||||
Sbjct: 48270 gaaaatgaagaaaaacctca 48251
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>emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, complete sequence
          Length = 216863

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    cctcttttcagcagggaaaa 129
              ||||||||||||||||||||
Sbjct: 157864 cctcttttcagcagggaaaa 157845
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>dbj|AP005805.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0006M19
          Length = 144073

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   agcccctgcattcctcaagc 331
             ||||||||||||||||||||
Sbjct: 37137 agcccctgcattcctcaagc 37156
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    agcccctgcattcctcaagc 331
              ||||||||||||||||||||
Sbjct: 117744 agcccctgcattcctcaagc 117763
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>dbj|BS000056.1| Pan troglodytes chromosome 22 clone:RP43-138K13, map 22, complete
             sequences
          Length = 150136

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aagaaaaacctcaaccctct 114
             ||||||||||||||||||||
Sbjct: 40127 aagaaaaacctcaaccctct 40108
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>emb|AL672205.7| Mouse DNA sequence from clone RP23-149B17 on chromosome X, complete
             sequence
          Length = 220464

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ttctgggaaaatgaagaaaa 101
             ||||||||||||||||||||
Sbjct: 95279 ttctgggaaaatgaagaaaa 95260
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>gb|AC156271.5| Mus musculus 10 BAC RP24-317L8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 191073

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     tctgggaaaatgaagaaaaa 102
              ||||||||||||||||||||
Sbjct: 137999 tctgggaaaatgaagaaaaa 138018
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>dbj|AP001677.1| Homo sapiens genomic DNA, chromosome 21q, section 21/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     aagaaaaacctcaaccctct 114
              ||||||||||||||||||||
Sbjct: 175752 aagaaaaacctcaaccctct 175733
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>ref|NM_054064.1| Mus musculus pregnancy-specific glycoprotein 29 (Psg29), mRNA
          Length = 4479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 141  agcatgacaacccccacaga 160
            ||||||||||||||||||||
Sbjct: 3036 agcatgacaacccccacaga 3017
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>gb|AC132409.3| Mus musculus BAC clone RP23-346B1 from 6, complete sequence
          Length = 207528

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    cctcttttcagcagggaaaa 129
              ||||||||||||||||||||
Sbjct: 102182 cctcttttcagcagggaaaa 102163
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>dbj|AP000946.3| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B335N5,
             LL56-APP region, complete sequence
          Length = 137343

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aagaaaaacctcaaccctct 114
             ||||||||||||||||||||
Sbjct: 59074 aagaaaaacctcaaccctct 59055


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,113,576
Number of Sequences: 3902068
Number of extensions: 4113576
Number of successful extensions: 115430
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115315
Number of HSP's gapped (non-prelim): 111
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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