Clone Name | rbastl14d12 |
---|---|
Clone Library Name | barley_pub |
>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene, exons 1 through 18 and complete sequence Length = 8809 Score = 212 bits (107), Expect = 4e-52 Identities = 146/159 (91%) Strand = Plus / Minus Query: 12 aacactgaattatgacatcaagaaggtacaaacatctctaaatgccactggaggcacaag 71 ||||||||||||||| |||||||||||||| ||||||| ||||||| ||| ||||||||| Sbjct: 8241 aacactgaattatgatatcaagaaggtacagacatctcgaaatgccgctgtaggcacaag 8182 Query: 72 ggtttcagatagcaaacagtacaccaacaccagaattcccgtaaaacagacacgagcagt 131 ||||||||||||||||||||||||||| | ||||| || | ||||||||||| |||||| Sbjct: 8181 ggtttcagatagcaaacagtacaccaatatcagaactctcacaaaacagacacaagcagt 8122 Query: 132 cattttgccaacttacactacaagtggacatttctagct 170 ||||||||| ||||||||||||||||||||||||||||| Sbjct: 8121 cattttgccgacttacactacaagtggacatttctagct 8083 Score = 103 bits (52), Expect = 3e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 199 gctgaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcat 258 ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct: 8041 gctgatgttgattgagttgttatgctgcaactggatgcctgatgatcccacgcccttcgt 7982 Query: 259 ccaggacaaagc 270 ||||||| |||| Sbjct: 7981 ccaggacgaagc 7970 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 180 gctcttgaacaaagaggtagctg 202 ||||||||||||||||||||||| Sbjct: 8085 gctcttgaacaaagaggtagctg 8063
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA, complete cds Length = 2923 Score = 97.6 bits (49), Expect = 2e-17 Identities = 64/69 (92%) Strand = Plus / Minus Query: 202 gaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcatcca 261 ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||| | Sbjct: 2923 gaggtcgattgagttgttatgccgcaactggatgcctgatgatcccacgcccttcatcga 2864 Query: 262 ggacaaagc 270 ||||||||| Sbjct: 2863 ggacaaagc 2855
>gb|AY109731.1| Zea mays CL9169_1 mRNA sequence Length = 623 Score = 58.0 bits (29), Expect = 1e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 230 tggatgcttgatgatcccacgcccttcatccag 262 ||||||| ||||||||||||||||||||||||| Sbjct: 178 tggatgcctgatgatcccacgcccttcatccag 210
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence Length = 188853 Score = 42.1 bits (21), Expect = 0.89 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 aaagaggtagctgaggttgat 210 ||||||||||||||||||||| Sbjct: 103298 aaagaggtagctgaggttgat 103318
>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence Length = 159635 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaacatctctaaatgccact 60 |||||||||||||||||||| Sbjct: 104407 aaacatctctaaatgccact 104388
>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the 3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1 gene for integrin beta 1 (fibronectin receptor beta polypeptide antigen CD29 includes MDF2 MSK12), an adenylate kinase 3 like 1 (AK3L1) pseudogene, a novel gene, the 5' end of a novel gene, a NADH dehydrogenase subunit 4L (ND4L) pseudogene, a pseudogene similar to part of integrin beta 2 (antigen CD18 (p95) lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit) (ITGB2) and a CpG island, complete sequence Length = 197973 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ggaggcacaagggtttcaga 80 |||||||||||||||||||| Sbjct: 92711 ggaggcacaagggtttcaga 92692
>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence Length = 177301 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaacatctctaaatgccact 60 |||||||||||||||||||| Sbjct: 117250 aaacatctctaaatgccact 117231
>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence Length = 156721 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaacatctctaaatgccact 60 |||||||||||||||||||| Sbjct: 25257 aaacatctctaaatgccact 25276
>dbj|AP000040.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 11/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgctgctactggatgcttga 240 |||||||||||||||||||| Sbjct: 14249 tgctgctactggatgcttga 14268
>emb|AL954212.1| Pan troglodytes chromosome 22 clone RP43-043L10 map 22q22.11, complete sequence Length = 192328 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgctgctactggatgcttga 240 |||||||||||||||||||| Sbjct: 50412 tgctgctactggatgcttga 50431
>dbj|AP001715.1| Homo sapiens genomic DNA, chromosome 21q, section 59/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgctgctactggatgcttga 240 |||||||||||||||||||| Sbjct: 179399 tgctgctactggatgcttga 179418
>dbj|AB056778.1| Macaca fascicularis brain cDNA clone:QccE-21094, full insert sequence Length = 1550 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gaacaaagaggtagctgagg 205 |||||||||||||||||||| Sbjct: 727 gaacaaagaggtagctgagg 746
>dbj|AP000281.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:T1588, complete sequence Length = 66129 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgctgctactggatgcttga 240 |||||||||||||||||||| Sbjct: 58308 tgctgctactggatgcttga 58327
>dbj|AP000184.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 11/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgctgctactggatgcttga 240 |||||||||||||||||||| Sbjct: 20225 tgctgctactggatgcttga 20244
>dbj|AP000108.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 11/20 Length = 100000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tgctgctactggatgcttga 240 |||||||||||||||||||| Sbjct: 20225 tgctgctactggatgcttga 20244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,139,897 Number of Sequences: 3902068 Number of extensions: 2139897 Number of successful extensions: 42357 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42336 Number of HSP's gapped (non-prelim): 21 length of query: 270 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 248 effective length of database: 17,147,199,772 effective search space: 4252505543456 effective search space used: 4252505543456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)