ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LONH2_MAIZE (P93648) Lon protease homolog 2, mitochondrial precu... 28 4.5
2ASB5_MOUSE (Q9D1A4) Ankyrin repeat and SOCS box protein 5 (ASB-5) 28 5.9
3ASB5_HUMAN (Q8WWX0) Ankyrin repeat and SOCS box protein 5 (ASB-5) 28 5.9
4AMPA_MYCPA (Q73YK2) Probable cytosol aminopeptidase (EC 3.4.11.1... 28 5.9
5CXCR2_BOVIN (Q28003) High affinity interleukin-8 receptor B (IL-... 28 7.7
6PIN2_CAEEL (Q19157) LIM protein pin-2 27 10.0

>LONH2_MAIZE (P93648) Lon protease homolog 2, mitochondrial precursor (EC|
            3.4.21.-)
          Length = 964

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/20 (70%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = -2

Query: 309  DTYNEIYKLAFQNE--TETS 256
            DTY+EIY LAFQ++  TETS
Sbjct: 945  DTYSEIYDLAFQSDAGTETS 964



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>ASB5_MOUSE (Q9D1A4) Ankyrin repeat and SOCS box protein 5 (ASB-5)|
          Length = 329

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 17  FEQTSSFSYFT*LLNYLATDILVKISLNILSHGTLGKNN 133
           F Q  S  YFT +L+     + VKISL ILSH  + K N
Sbjct: 10  FAQQLSNVYFT-ILSLFCFKLFVKISLAILSHFYIVKGN 47



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>ASB5_HUMAN (Q8WWX0) Ankyrin repeat and SOCS box protein 5 (ASB-5)|
          Length = 329

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 17  FEQTSSFSYFT*LLNYLATDILVKISLNILSHGTLGKNN 133
           F Q  S  YFT +L+     + VKISL ILSH  + K N
Sbjct: 10  FAQQLSNVYFT-ILSLFCFKLFVKISLAILSHFYIVKGN 47



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>AMPA_MYCPA (Q73YK2) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 515

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 168 EWPSCKLRSVFSLAPKTLRNLNTLFELLASL 260
           EWP+  +R    +A ++L N  T+F  LA+L
Sbjct: 100 EWPADTVRRAAGVAARSLSNTETVFTTLAAL 130



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>CXCR2_BOVIN (Q28003) High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2)|
           (CD182 antigen)
          Length = 360

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -1

Query: 214 FGARLNTERSLQLGHSLQDQE*LFVVMIVFS*CPM*QYV*GNFDENVRG*IVEELCEIRK 35
           +G  L T  S Q+GH  +    +F V++VF  C +   +    D  +R  ++ E C+ R 
Sbjct: 231 YGFTLRTLFSAQMGHKHRAMRVIFAVVLVFLLCWLPYNLVLIADTLMRAHVIAETCQRRN 290

Query: 34  TRG 26
             G
Sbjct: 291 DIG 293



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>PIN2_CAEEL (Q19157) LIM protein pin-2|
          Length = 329

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -3

Query: 266 QKQASKQFKQSIQIAQGLWGKTEYGTKFAARPFFA-----RSGVTFCCNDCFFLVSH 111
           +K    Q +QSI      W    +     ARPFF      ++G  +C +D   L+ H
Sbjct: 205 KKVIDPQVEQSIFTMNKHWHTDHFRCATCARPFFGHEHYEKNGKAYCRDDFLELIGH 261


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,932,395
Number of Sequences: 219361
Number of extensions: 628409
Number of successful extensions: 1509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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