ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, comple... 44 0.15
2gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17... 44 0.15
3dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds 40 2.4
4emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in... 40 2.4
5gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, comp... 40 2.4
6gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosom... 40 2.4
7gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome... 40 2.4
8gb|AC102458.8| Mus musculus chromosome 1, clone RP24-312N11, com... 38 9.5
9ref|NM_007803.2| Mus musculus cortactin (Cttn), mRNA 38 9.5
10gb|AE006875.1| Sulfolobus solfataricus P2 section 234 of 272 of ... 38 9.5
11gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.5
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.5
13gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 38 9.5
14gb|AC122322.4| Mus musculus BAC clone RP23-321G20 from chromosom... 38 9.5
15gb|BC011434.1| Mus musculus cortactin, mRNA (cDNA clone MGC:1847... 38 9.5
16emb|AL136080.6| Human DNA sequence from clone RP11-448E12 on chr... 38 9.5
17emb|AL110117.3|HSJ474M20 Human DNA sequence from clone RP3-474M2... 38 9.5
18gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 38 9.5
19dbj|AK146856.1| Mus musculus 17 days pregnant adult female amnio... 38 9.5
20dbj|AK148010.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 38 9.5
21dbj|AK165555.1| Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN ... 38 9.5
22dbj|AK168945.1| Mus musculus 17 days pregnant adult female amnio... 38 9.5
23dbj|AK168871.1| Mus musculus 17 days pregnant adult female amnio... 38 9.5
24dbj|AK168699.1| Mus musculus 16 days embryo heart cDNA, RIKEN fu... 38 9.5
25dbj|AK084249.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 38 9.5
26dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
27dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.5
29gb|AC073393.2|AC073393 Oryza sativa (japonica cultivar-group) ch... 38 9.5
30dbj|AK218098.1| Mus musculus cDNA, clone:Y2G0144A02, strand:plus... 38 9.5
31dbj|AK203816.1| Mus musculus cDNA, clone:Y1G0146E22, strand:plus... 38 9.5
32dbj|AK202001.1| Mus musculus cDNA, clone:Y1G0140B04, strand:minu... 38 9.5
33dbj|AK196614.1| Mus musculus cDNA, clone:Y1G0122G05, strand:plus... 38 9.5
34dbj|AK196419.1| Mus musculus cDNA, clone:Y1G0121M16, strand:minu... 38 9.5
35dbj|AK196228.1| Mus musculus cDNA, clone:Y1G0121D07, strand:plus... 38 9.5
36dbj|AK192685.1| Mus musculus cDNA, clone:Y1G0109K01, strand:plus... 38 9.5
37dbj|AK187968.1| Mus musculus cDNA, clone:Y0G0143K10, strand:plus... 38 9.5
38gb|AC153834.2| Mus musculus 6 BAC RP23-367J4 (Roswell Park Cance... 38 9.5
39emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence 38 9.5
40emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chr... 38 9.5
41emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chro... 38 9.5
42gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.5
43gb|AC140374.3| Mus musculus BAC clone RP24-76K4 from 6, complete... 38 9.5
44emb|Z54334.1|HSL139H8 Human DNA sequence from clone LA04NC01-139... 38 9.5
45gb|AC155326.8| Mus musculus 6 BAC RP24-72P18 (Roswell Park Cance... 38 9.5
46emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chr... 38 9.5
47emb|AL844843.4| Mouse DNA sequence from clone RP23-376P3 on chro... 38 9.5
48emb|AL806531.12| Mouse DNA sequence from clone RP23-188K22 on ch... 38 9.5
49gb|U03184.1|MMU03184 Mus musculus BALB/c cortactin mRNA, complet... 38 9.5 
>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence
          Length = 126582

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 34    gaaacaaaattggccaactgtt 55
             ||||||||||||||||||||||
Sbjct: 18543 gaaacaaaattggccaactgtt 18522
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>gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17, complete sequence
          Length = 95855

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 34    gaaacaaaattggccaactgtt 55
             ||||||||||||||||||||||
Sbjct: 95383 gaaacaaaattggccaactgtt 95362
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>dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds
          Length = 153079

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ttaccacatctttctctttt 187
             ||||||||||||||||||||
Sbjct: 72182 ttaccacatctttctctttt 72163
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>emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in linkage group 8,
             complete sequence
          Length = 197947

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   atgacaaaatctacataagc 121
             ||||||||||||||||||||
Sbjct: 74665 atgacaaaatctacataagc 74646
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>gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, complete sequence
          Length = 187174

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    tctgtctctcaacttttcaacata 78
             ||||||||||||||||| ||||||
Sbjct: 51265 tctgtctctcaacttttaaacata 51288
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>gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosome 9, complete sequence
          Length = 160212

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    caaaattggccaactgttctgtct 61
             |||||||| |||||||||||||||
Sbjct: 77078 caaaattgcccaactgttctgtct 77101
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>gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome 9, complete sequence
          Length = 112760

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    caaaattggccaactgttctgtct 61
             |||||||| |||||||||||||||
Sbjct: 86425 caaaattgcccaactgttctgtct 86448
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>gb|AC102458.8| Mus musculus chromosome 1, clone RP24-312N11, complete sequence
          Length = 167263

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 136   ttatcggttaaacatggtg 154
             |||||||||||||||||||
Sbjct: 29750 ttatcggttaaacatggtg 29732
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>ref|NM_007803.2| Mus musculus cortactin (Cttn), mRNA
          Length = 3030

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 154 ccacatctttctcttttgc 136
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>gb|AE006875.1| Sulfolobus solfataricus P2 section 234 of 272 of the complete genome
          Length = 10485

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 65   aacttttcaacatacgatgtaag 87
            |||||||||||||||||| ||||
Sbjct: 7407 aacttttcaacatacgatctaag 7385
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>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0022L07, complete sequence
          Length = 142134

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    aactgttctgtctctcaac 67
             |||||||||||||||||||
Sbjct: 92236 aactgttctgtctctcaac 92254
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 16       aaaagctcaaaacctgacg 34
                |||||||||||||||||||
Sbjct: 31182705 aaaagctcaaaacctgacg 31182723



 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 49       aactgttctgtctctcaac 67
                |||||||||||||||||||
Sbjct: 18370520 aactgttctgtctctcaac 18370502
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
              sequence
          Length = 159579

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     aactgttctgtctctcaac 67
              |||||||||||||||||||
Sbjct: 136951 aactgttctgtctctcaac 136933
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>gb|AC122322.4| Mus musculus BAC clone RP23-321G20 from chromosome 6, complete sequence
          Length = 203073

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 171    ccacatctttctcttttgc 189
              |||||||||||||||||||
Sbjct: 132460 ccacatctttctcttttgc 132442
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>gb|BC011434.1| Mus musculus cortactin, mRNA (cDNA clone MGC:18474 IMAGE:3981559),
           complete cds
          Length = 2916

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 140 ccacatctttctcttttgc 122
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>emb|AL136080.6| Human DNA sequence from clone RP11-448E12 on chromosome Xq22.1-23
              Contains part of the COL4A6 gene for collagen type IV alpha
              6, complete sequence
          Length = 116106

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     atgtaagctggtcactcat 99
              |||||||||||||||||||
Sbjct: 101313 atgtaagctggtcactcat 101295
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>emb|AL110117.3|HSJ474M20 Human DNA sequence from clone RP3-474M20 on chromosome 4, complete
              sequence
          Length = 129323

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     ccaaaagctcaaaacctga 32
              |||||||||||||||||||
Sbjct: 109030 ccaaaagctcaaaacctga 109012
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
              sequence
          Length = 128017

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     aaaagctcaaaacctgacg 34
              |||||||||||||||||||
Sbjct: 103346 aaaagctcaaaacctgacg 103364
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>dbj|AK146856.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920066C14
           product:cortactin, full insert sequence
          Length = 3030

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 154 ccacatctttctcttttgc 136
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>dbj|AK148010.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
           clone:G270138D24 product:cortactin, full insert sequence
          Length = 3014

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 150 ccacatctttctcttttgc 132
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>dbj|AK165555.1| Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN full-length
           enriched library, clone:G430005L23 product:cortactin,
           full insert sequence
          Length = 2901

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 150 ccacatctttctcttttgc 132
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>dbj|AK168945.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920066N09
           product:cortactin, full insert sequence
          Length = 2914

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 158 ccacatctttctcttttgc 140
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>dbj|AK168871.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920062B15
           product:cortactin, full insert sequence
          Length = 2901

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 148 ccacatctttctcttttgc 130
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>dbj|AK168699.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:I920046E22 product:cortactin, full insert
           sequence
          Length = 3012

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 148 ccacatctttctcttttgc 130
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>dbj|AK084249.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230013O13 product:cortactin,
           full insert sequence
          Length = 2908

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 157 ccacatctttctcttttgc 139
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 10       aactccaaaagctcaaaacctga 32
                ||||| |||||||||||||||||
Sbjct: 15813126 aactctaaaagctcaaaacctga 15813104
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 49       aactgttctgtctctcaac 67
                |||||||||||||||||||
Sbjct: 14232903 aactgttctgtctctcaac 14232921
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 16       aaaagctcaaaacctgacg 34
                |||||||||||||||||||
Sbjct: 31273228 aaaagctcaaaacctgacg 31273246



 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 49       aactgttctgtctctcaac 67
                |||||||||||||||||||
Sbjct: 18364561 aactgttctgtctctcaac 18364543
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>gb|AC073393.2|AC073393 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0076M18,
              complete sequence
          Length = 132647

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 10     aactccaaaagctcaaaacctga 32
              ||||| |||||||||||||||||
Sbjct: 108086 aactctaaaagctcaaaacctga 108064
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>dbj|AK218098.1| Mus musculus cDNA, clone:Y2G0144A02, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK203816.1| Mus musculus cDNA, clone:Y1G0146E22, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK202001.1| Mus musculus cDNA, clone:Y1G0140B04, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 355

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK196614.1| Mus musculus cDNA, clone:Y1G0122G05, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK196419.1| Mus musculus cDNA, clone:Y1G0121M16, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK196228.1| Mus musculus cDNA, clone:Y1G0121D07, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000070094, based on BLAT search
          Length = 352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK192685.1| Mus musculus cDNA, clone:Y1G0109K01, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 337

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 102 ccacatctttctcttttgc 84
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>dbj|AK187968.1| Mus musculus cDNA, clone:Y0G0143K10, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000033407, based on BLAT search
          Length = 352

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 101 ccacatctttctcttttgc 83
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>gb|AC153834.2| Mus musculus 6 BAC RP23-367J4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 152354

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 81    atgtaagctggtcactcatggat 103
             |||||||| ||||||||||||||
Sbjct: 33667 atgtaagcaggtcactcatggat 33645
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>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence
          Length = 168910

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 140   cggttaaacatggtgtcac 158
             |||||||||||||||||||
Sbjct: 78003 cggttaaacatggtgtcac 78021
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>emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chromosome 4, complete
              sequence
          Length = 183261

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     gtcactcatggatgacaaa 109
              |||||||||||||||||||
Sbjct: 144452 gtcactcatggatgacaaa 144470
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>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete
             sequence
          Length = 189998

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     caataactccaaaagctca 24
             |||||||||||||||||||
Sbjct: 45069 caataactccaaaagctca 45051
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 10       aactccaaaagctcaaaacctga 32
                ||||| |||||||||||||||||
Sbjct: 15821367 aactctaaaagctcaaaacctga 15821345
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>gb|AC140374.3| Mus musculus BAC clone RP24-76K4 from 6, complete sequence
          Length = 192872

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 171    ccacatctttctcttttgc 189
              |||||||||||||||||||
Sbjct: 109052 ccacatctttctcttttgc 109070
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>emb|Z54334.1|HSL139H8 Human DNA sequence from clone LA04NC01-139H8 on chromosome 4,
            complete sequence
          Length = 31929

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 14   ccaaaagctcaaaacctga 32
            |||||||||||||||||||
Sbjct: 9286 ccaaaagctcaaaacctga 9268
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>gb|AC155326.8| Mus musculus 6 BAC RP24-72P18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 184159

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 81     atgtaagctggtcactcatggat 103
              |||||||| ||||||||||||||
Sbjct: 164370 atgtaagcaggtcactcatggat 164348
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>emb|AL731692.8| Mouse DNA sequence from clone RP23-245M18 on chromosome X, complete
              sequence
          Length = 169309

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                     
Query: 36     aacaaaattggccaactgttctgtctctcaacttttcaa 74
              |||||| ||| ||||||||||||| |||||  |||||||
Sbjct: 163251 aacaaagttgcccaactgttctgtttctcatgttttcaa 163289



 Score = 38.2 bits (19), Expect = 9.5
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                     
Query: 36     aacaaaattggccaactgttctgtctctcaacttttcaa 74
              |||||| ||| ||||||||||||| |||||  |||||||
Sbjct: 149629 aacaaagttgcccaactgttctgtttctcatgttttcaa 149667
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>emb|AL844843.4| Mouse DNA sequence from clone RP23-376P3 on chromosome X, complete
             sequence
          Length = 193470

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   tgacaaaatctacataagc 121
             |||||||||||||||||||
Sbjct: 50639 tgacaaaatctacataagc 50621
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>emb|AL806531.12| Mouse DNA sequence from clone RP23-188K22 on chromosome X, complete
             sequence
          Length = 70515

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 34/39 (87%)
 Strand = Plus / Minus

                                                    
Query: 36    aacaaaattggccaactgttctgtctctcaacttttcaa 74
             |||||| ||| ||||||||||||| |||||  |||||||
Sbjct: 67079 aacaaagttgcccaactgttctgtttctcatgttttcaa 67041
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>gb|U03184.1|MMU03184 Mus musculus BALB/c cortactin mRNA, complete cds
          Length = 1867

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ccacatctttctcttttgc 189
           |||||||||||||||||||
Sbjct: 136 ccacatctttctcttttgc 118


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,755,807
Number of Sequences: 3902068
Number of extensions: 1755807
Number of successful extensions: 115941
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115643
Number of HSP's gapped (non-prelim): 298
length of query: 191
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 169
effective length of database: 17,147,199,772
effective search space: 2897876761468
effective search space used: 2897876761468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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