ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14d07 |
|---|---|
| Clone Library Name | barley_pub |
>MBHS_RHOGE (P17633) Uptake hydrogenase small subunit precursor (EC 1.12.99.6)| (Hydrogenlyase) (Membrane-bound hydrogenase small subunit) Length = 361 Score = 30.8 bits (68), Expect = 0.89 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +3 Query: 78 NFCHAVEMKWYNTGEPKLSGASGY-IFRHNIPRDEDLVAPTCNCLVKWQPCHSW 236 N+ AVE G P L+ + I R +PR+ VA C ++ W C SW Sbjct: 112 NYILAVE------GNPPLNEDGMFCIQRQALPREAQAVAADCKAVIAWGSCASW 159
>D7_XENLA (P13007) Protein D7| Length = 278 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = +3 Query: 33 ILYCSAQRPHLQR*DNF-CHAVEMKWYNTGEPKLSGASGYIFRHNIPRDE-DLVAPTCNC 206 ++ C + H+ R F H V+ + N K+ Y RH +P+ E DL +C Sbjct: 6 LMQCPYDKNHMIRPSRFPYHLVKCRENNRAAAKILATCPYNARHRVPKQELDLHMASCEY 65 Query: 207 LVKWQP 224 V +P Sbjct: 66 RVTMEP 71
>GBLP_TRYBR (P69104) Guanine nucleotide-binding protein beta subunit-like| protein (Activated protein kinase C receptor homolog) (Track) Length = 318 Score = 29.3 bits (64), Expect = 2.6 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = -1 Query: 323 SARRYNESNSQSSFQQGRHCDDYMV*SCHPAVAWLPFY-QAVAGGSDEVLVAWNVVSE-- 153 S R +N N Q ++ H D + +VA+ P Q V+GG D L WNV E Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVL------SVAFSPDNRQIVSGGRDNALRVWNVKGECM 143 Query: 152 -DVTRSTRKFWFSRV 111 ++R W S V Sbjct: 144 HTLSRGAHTDWVSCV 158
>GBLP_TRYBB (P69103) Guanine nucleotide-binding protein beta subunit-like| protein (Activated protein kinase C receptor homolog) Length = 318 Score = 29.3 bits (64), Expect = 2.6 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = -1 Query: 323 SARRYNESNSQSSFQQGRHCDDYMV*SCHPAVAWLPFY-QAVAGGSDEVLVAWNVVSE-- 153 S R +N N Q ++ H D + +VA+ P Q V+GG D L WNV E Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVL------SVAFSPDNRQIVSGGRDNALRVWNVKGECM 143 Query: 152 -DVTRSTRKFWFSRV 111 ++R W S V Sbjct: 144 HTLSRGAHTDWVSCV 158
>MORG1_HUMAN (Q9BRX9) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 315 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -1 Query: 200 AGGSDEVLVAWNVVSEDVTRSTRKFWFSRVVPFHFNGMAKVILA 69 +GG D+ +V W+V S V R R +V FN A VIL+ Sbjct: 84 SGGGDKAVVLWDVASGQVVRKFRGH-AGKVNTVQFNEEATVILS 126
>FUS_MEASZ (P69358) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>FUS_MEASP (P69357) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>FUS_MEASL (P69356) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>FUS_MEASH (P69355) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>FUS_MEASF (P69354) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>FUS_MEASE (P69353) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>FUS_MEASA (P35973) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 28.5 bits (62), Expect = 4.4 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKV 127 S+ Q LR + GL SS+C +V IL + C G P + CC RCN+K ++V Sbjct: 479 SSDQILRSMKGL--SSTC-IVYILIAVCLGGLIGIPALICCCRGRCNKKGEQV 528
>SRBP1_MOUSE (Q9WTN3) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1134 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +2 Query: 152 LQTQHSTRRGPRRSHLQLLG---KMATMPQLDDNFKPYSRR 265 +Q H T GP+ S L+L G ++++ +L +F+P RR Sbjct: 981 VQVAHGTSNGPQASALELRGFQHDLSSLRRLAQSFRPAMRR 1021
>FUS_MEASY (P26032) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 534 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 282 SARQALRRLYGLKLSSSCGMVAILPSSCRWERRG-PRRVECCV*RCNQKHQKVL 124 S+ Q LR + GL SS +V IL + C G P + CC RCN++ K++ Sbjct: 479 SSDQILRSMKGL---SSTSIVYILIAVCLGGLIGIPALICCCRGRCNKRENKLV 529
>YFBW_SALTI (P81891) Inner membrane protein yfbW| Length = 111 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1 Query: 230 VAWLPFYQAVAGGSDEVLVAWNVVSEDVTRSTRKFWFSRVVPFHFNGMAKVI 75 V WL Q + G +++ N V VT + K W +V+P H+ G+A +I Sbjct: 52 VLWLLVLQTLPVGIAYPMLSLNFVW--VTLAAWKIWHEQVLPRHWLGVALII 101
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 27.7 bits (60), Expect = 7.5 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = -3 Query: 201 CRWERRGPRRVECCV*RCNQKHQK 130 C+W+ + P R + CV C +++Q+ Sbjct: 129 CQWQEQRPERKQQCVKECREQYQE 152
>MORG1_RAT (Q5BLX8) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 315 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 200 AGGSDEVLVAWNVVSEDVTRSTRKFWFSRVVPFHFNGMAKVILA 69 +GG D+ +V W+V + V R R +V FN A VIL+ Sbjct: 84 SGGGDKTVVLWDVATGQVVRKFRGH-AGKVNTVQFNEEATVILS 126
>MORG1_MOUSE (Q9DAJ4) Mitogen-activated protein kinase organizer 1 (MAPK| organizer 1) Length = 315 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 200 AGGSDEVLVAWNVVSEDVTRSTRKFWFSRVVPFHFNGMAKVILA 69 +GG D+ +V W+V + V R R +V FN A VIL+ Sbjct: 84 SGGGDKTVVLWDVATGQVVRKFRGH-AGKVNTVQFNEEATVILS 126
>LG1_MAIZE (O04003) LIGULELESS1 protein| Length = 399 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 142 LVTSSDTTFHATRTSSLPPATA 207 LV++ TTFH T +S PPA A Sbjct: 111 LVSAPGTTFHQTSSSYYPPAAA 132
>PIC_ECOL6 (Q8CWC7) Serine protease pic precursor (EC 3.4.21.-)| Length = 1371 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/42 (28%), Positives = 24/42 (57%) Frame = +1 Query: 67 NARITFAMPLK*NGTTRENQNFLVLLVTSSDTTFHATRTSSL 192 +A ++ + P+ N EN+ F++ ++ D FH +R +SL Sbjct: 669 HASVSGSAPVSLNQKDWENRQFIMKTLSLKDADFHLSRNASL 710
>CR7AB_BACUK (Q45708) Pesticidal crystal protein cry7Ab (Insecticidal| delta-endotoxin CryVIIA(b)) (Crystaline entomocidal protoxin) (130 kDa crystal protein) Length = 1138 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 51 QRPHLQR*DNFCHAVEMKWYNTGEPKLSGAS 143 Q+ H+ N C +KWYN+G +L+G++ Sbjct: 223 QKKHISEYSNHC----VKWYNSGLSRLNGST 249
>CR7AB_BACUA (Q45707) Pesticidal crystal protein cry7Ab (Insecticidal| delta-endotoxin CryVIIA(b)) (Crystaline entomocidal protoxin) (130 kDa crystal protein) Length = 1138 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +3 Query: 51 QRPHLQR*DNFCHAVEMKWYNTGEPKLSGAS 143 Q+ H+ N C +KWYN+G +L+G++ Sbjct: 223 QKKHISEYSNHC----VKWYNSGLSRLNGST 249
>YPHG_ECOLI (P76585) Hypothetical protein yphG| Length = 1124 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -3 Query: 297 FPVVIS-ARQALRRLYGLKLSSSCGMVAILPSSCRWERRG 181 FP ++ A QAL+R + L + CG +++ +S +ER+G Sbjct: 542 FPQAVAYATQALKRAHALNKNPQCGQASLIRASA-YERQG 580
>ALG1_YARLI (Q6C3K2) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) (Asparagine-linked gl Length = 463 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/47 (31%), Positives = 20/47 (42%) Frame = -1 Query: 239 HPAVAWLPFYQAVAGGSDEVLVAWNVVSEDVTRSTRKFWFSRVVPFH 99 HP V + FY+ GG V + V+ R T R+VP H Sbjct: 181 HPMVKFAKFYEGFFGGRAFVHLCVTVLMGQAMRKTFGMSGRRIVPLH 227 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,881,984 Number of Sequences: 219361 Number of extensions: 995970 Number of successful extensions: 2673 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2673 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
