Clone Name | rbastl14d07 |
---|---|
Clone Library Name | barley_pub |
>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I, complete sequence Length = 86372 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 aaccaaaactttctggtgctt 141 ||||||||||||||||||||| Sbjct: 56051 aaccaaaactttctggtgctt 56071
>gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete sequence Length = 114142 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 tgcaactgcttggtaaaatgg 218 ||||||||||||||||||||| Sbjct: 49421 tgcaactgcttggtaaaatgg 49441
>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence Length = 174156 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgcaactgcttggtaaaatg 217 |||||||||||||||||||| Sbjct: 114375 tgcaactgcttggtaaaatg 114394
>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence Length = 189323 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gcagtgcctgccttgctgaa 283 |||||||||||||||||||| Sbjct: 110077 gcagtgcctgccttgctgaa 110058
>emb|CR352303.12| Zebrafish DNA sequence from clone CH211-157C9 in linkage group 5, complete sequence Length = 45283 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aaccacttaaaacattatac 36 |||||||||||||||||||| Sbjct: 28179 aaccacttaaaacattatac 28198
>gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome 3, complete sequence Length = 213637 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ttggtaaaatggcaaccatg 226 |||||||||||||||||||| Sbjct: 46958 ttggtaaaatggcaaccatg 46939
>emb|CR318589.8| Zebrafish DNA sequence from clone DKEYP-107F9 in linkage group 14, complete sequence Length = 97627 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aaccacttaaaacattatac 36 |||||||||||||||||||| Sbjct: 39538 aaccacttaaaacattatac 39557
>emb|BX897739.8| Zebrafish DNA sequence from clone CH211-160J20 in linkage group 14, complete sequence Length = 162410 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaccacttaaaacattatac 36 |||||||||||||||||||| Sbjct: 23909 aaccacttaaaacattatac 23890
>emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chromosome 4 Contains the 3' end of the Mpdz gene for multiple PDZ domain protein, complete sequence Length = 180629 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 catcttcagacacaacattc 168 |||||||||||||||||||| Sbjct: 116700 catcttcagacacaacattc 116719
>emb|BX510934.6| Zebrafish DNA sequence from clone DKEY-40J3 in linkage group 4 Contains the gene for a novel protein containing a protein kinase domain and three CpG islands, complete sequence Length = 179094 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 aaccacttaaaacattatac 36 |||||||||||||||||||| Sbjct: 176970 aaccacttaaaacattatac 176951
>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence Length = 163065 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acatcttcagacacaacatt 167 |||||||||||||||||||| Sbjct: 13433 acatcttcagacacaacatt 13414
>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence Length = 169462 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 acatcttcagacacaacatt 167 |||||||||||||||||||| Sbjct: 95741 acatcttcagacacaacatt 95722
>gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, complete sequence Length = 204416 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 tgcaactgcttggtaaaatg 217 |||||||||||||||||||| Sbjct: 2438 tgcaactgcttggtaaaatg 2457
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aaccacttaaaacattatac 36 |||||||||||||||||||| Sbjct: 82283 aaccacttaaaacattatac 82302
>gb|AY913959.1| Hylaeus leptocephalus isolate H_bis_109 cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II (COII) gene, partial cds; mitochondrial Length = 1197 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cacttaaaacattatactgtattg 43 |||||||||||||||||| ||||| Sbjct: 1135 cacttaaaacattatactttattg 1158
>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence Length = 249504 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gcagtgcctgccttgctgaa 283 |||||||||||||||||||| Sbjct: 31759 gcagtgcctgccttgctgaa 31740
>emb|BX000453.8| Zebrafish DNA sequence from clone DKEY-157G7 in linkage group 7, complete sequence Length = 163585 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 23 ttaaaacattatactgtattgctc 46 ||||||||||||||| |||||||| Sbjct: 69138 ttaaaacattatactatattgctc 69161 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,780,592 Number of Sequences: 3902068 Number of extensions: 2780592 Number of successful extensions: 48710 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48681 Number of HSP's gapped (non-prelim): 29 length of query: 326 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 304 effective length of database: 17,147,199,772 effective search space: 5212748730688 effective search space used: 5212748730688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)