ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana... 42 1.1
2gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete... 42 1.1
3gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, com... 40 4.3
4gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosom... 40 4.3
5emb|CR352303.12| Zebrafish DNA sequence from clone CH211-157C9 i... 40 4.3
6gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome... 40 4.3
7emb|CR318589.8| Zebrafish DNA sequence from clone DKEYP-107F9 in... 40 4.3
8emb|BX897739.8| Zebrafish DNA sequence from clone CH211-160J20 i... 40 4.3
9emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chro... 40 4.3
10emb|BX510934.6| Zebrafish DNA sequence from clone DKEY-40J3 in l... 40 4.3
11gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence 40 4.3
12gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence 40 4.3
13gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, com... 40 4.3
14emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 40 4.3
15gb|AY913959.1| Hylaeus leptocephalus isolate H_bis_109 cytochrom... 40 4.3
16gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosom... 40 4.3
17emb|BX000453.8| Zebrafish DNA sequence from clone DKEY-157G7 in ... 40 4.3

>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I,
             complete sequence
          Length = 86372

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   aaccaaaactttctggtgctt 141
             |||||||||||||||||||||
Sbjct: 56051 aaccaaaactttctggtgctt 56071



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>gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete sequence
          Length = 114142

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   tgcaactgcttggtaaaatgg 218
             |||||||||||||||||||||
Sbjct: 49421 tgcaactgcttggtaaaatgg 49441



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>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence
          Length = 174156

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    tgcaactgcttggtaaaatg 217
              ||||||||||||||||||||
Sbjct: 114375 tgcaactgcttggtaaaatg 114394



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>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    gcagtgcctgccttgctgaa 283
              ||||||||||||||||||||
Sbjct: 110077 gcagtgcctgccttgctgaa 110058



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>emb|CR352303.12| Zebrafish DNA sequence from clone CH211-157C9 in linkage group 5,
             complete sequence
          Length = 45283

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    aaccacttaaaacattatac 36
             ||||||||||||||||||||
Sbjct: 28179 aaccacttaaaacattatac 28198



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>gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome 3, complete sequence
          Length = 213637

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ttggtaaaatggcaaccatg 226
             ||||||||||||||||||||
Sbjct: 46958 ttggtaaaatggcaaccatg 46939



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>emb|CR318589.8| Zebrafish DNA sequence from clone DKEYP-107F9 in linkage group 14,
             complete sequence
          Length = 97627

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    aaccacttaaaacattatac 36
             ||||||||||||||||||||
Sbjct: 39538 aaccacttaaaacattatac 39557



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>emb|BX897739.8| Zebrafish DNA sequence from clone CH211-160J20 in linkage group 14,
             complete sequence
          Length = 162410

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aaccacttaaaacattatac 36
             ||||||||||||||||||||
Sbjct: 23909 aaccacttaaaacattatac 23890



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>emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chromosome 4 Contains the 3'
              end of the Mpdz gene for multiple PDZ domain protein,
              complete sequence
          Length = 180629

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    catcttcagacacaacattc 168
              ||||||||||||||||||||
Sbjct: 116700 catcttcagacacaacattc 116719



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>emb|BX510934.6| Zebrafish DNA sequence from clone DKEY-40J3 in linkage group 4 Contains
              the gene for a novel protein containing a protein kinase
              domain and three CpG islands, complete sequence
          Length = 179094

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aaccacttaaaacattatac 36
              ||||||||||||||||||||
Sbjct: 176970 aaccacttaaaacattatac 176951



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>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence
          Length = 163065

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   acatcttcagacacaacatt 167
             ||||||||||||||||||||
Sbjct: 13433 acatcttcagacacaacatt 13414



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>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence
          Length = 169462

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   acatcttcagacacaacatt 167
             ||||||||||||||||||||
Sbjct: 95741 acatcttcagacacaacatt 95722



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>gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, complete sequence
          Length = 204416

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  tgcaactgcttggtaaaatg 217
            ||||||||||||||||||||
Sbjct: 2438 tgcaactgcttggtaaaatg 2457



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4,
             complete sequence
          Length = 227565

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    aaccacttaaaacattatac 36
             ||||||||||||||||||||
Sbjct: 82283 aaccacttaaaacattatac 82302



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>gb|AY913959.1| Hylaeus leptocephalus isolate H_bis_109 cytochrome oxidase subunit I
            (COI) gene, partial cds; tRNA-Leu gene, complete
            sequence; and cytochrome oxidase subunit II (COII) gene,
            partial cds; mitochondrial
          Length = 1197

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 20   cacttaaaacattatactgtattg 43
            |||||||||||||||||| |||||
Sbjct: 1135 cacttaaaacattatactttattg 1158



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>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence
          Length = 249504

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   gcagtgcctgccttgctgaa 283
             ||||||||||||||||||||
Sbjct: 31759 gcagtgcctgccttgctgaa 31740



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>emb|BX000453.8| Zebrafish DNA sequence from clone DKEY-157G7 in linkage group 7,
             complete sequence
          Length = 163585

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    ttaaaacattatactgtattgctc 46
             ||||||||||||||| ||||||||
Sbjct: 69138 ttaaaacattatactatattgctc 69161


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,780,592
Number of Sequences: 3902068
Number of extensions: 2780592
Number of successful extensions: 48710
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48681
Number of HSP's gapped (non-prelim): 29
length of query: 326
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 304
effective length of database: 17,147,199,772
effective search space: 5212748730688
effective search space used: 5212748730688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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