>RA51B_MOUSE (O35719) DNA repair protein RAD51 homolog 2 (R51H2) (RAD51-like|
           protein 1)
          Length = 350

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 336 STLVCALRQVDISLHAGVPDRSSSQYLGDPHCVPQHFSLL 217
           ST +CAL   D +LH GVP  S ++  G P C    F ++
Sbjct: 84  STTLCAL---DEALHGGVPCGSLTEITGPPGCGKTQFCIM 120

>ACSA_BRAJA (Q89WV5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA|
           ligase) (Acyl-activating enzyme)
          Length = 648

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 16  PSYHSNPKFFDITQTVHSSHIFFTNGSPLRLTLRGGPVELKATNAMNLK 162
           P+Y  N +F+++    H  + F+T  + +R  ++GG   +K T+  +L+
Sbjct: 331 PNYPDNSRFWNVIDK-HKVNTFYTAPTAIRALMQGGDEPVKKTSRASLR 378

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
 Frame = +1

Query: 19   SYHSNPKFFDITQTVHSSHIFFTNGSPLRLT------LRGGPVELKATNAMNLK 162
            +Y   PK      T+H+++IF+ N +P++L+      +   P++L+ T  M+LK
Sbjct: 6985 NYLGKPKEQIDGYTMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLK 7038

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
 Frame = +1

Query: 19   SYHSNPKFFDITQTVHSSHIFFTNGSPLRLT------LRGGPVELKATNAMNLK 162
            +Y   PK      T+H+++IF+ N +P++L+      +   P++L+ T  M+LK
Sbjct: 6983 NYLGKPKEQIDGYTMHANYIFWRNTNPIQLSSYSLFDMSKFPLKLRGTAVMSLK 7036

>NUOB_AQUAE (O67334) NADH-quinone oxidoreductase chain B (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain B) (NDH-1, chain B)
          Length = 179

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 404 LLVXLRTDVNRVTPMVETVLEKL--PRWCAPFGKSTS 300
           +L+   T VN+V PM++ + +++  P+WC   G   S
Sbjct: 66  VLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCAS 102

>GABD_DEIRA (O32507) Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)|
           (SSDH)
          Length = 477

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 232 LGNAMRVA*IL-TGRAVRNASV*GDVDLPKGAHQRGSFSRTVSTIGVTLFTS 384
           L  A RVA  L TG    N       DLP G  +R  F R +S++G+  FT+
Sbjct: 408 LDRAQRVAERLDTGMVWINHPTSSAADLPFGGVKRSGFGRELSSMGMLEFTN 459


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,845,082
Number of Sequences: 219361
Number of extensions: 1053588
Number of successful extensions: 2286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2283
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)