Clone Name | rbastl14d04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_104370.3| Arabidopsis thaliana ANP2; kinase AT1G54960 (ANP2) mRNA, complete cds Length = 2182 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 ggaggaggatgattctcttgat 262 |||||||||||||||||||||| Sbjct: 59 ggaggaggatgattctcttgat 38
>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence Length = 198036 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 104 acatattacagcataaatatat 125 |||||||||||||||||||||| Sbjct: 64588 acatattacagcataaatatat 64567
>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence Length = 175721 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 88 tagttacttacatacaacatat 109 |||||||||||||||||||||| Sbjct: 116716 tagttacttacatacaacatat 116695
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 108 attacagcataaatatataaag 129 |||||||||||||||||||||| Sbjct: 3649179 attacagcataaatatataaag 3649200
>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete sequence Length = 102135 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 ggaggaggatgattctcttgat 262 |||||||||||||||||||||| Sbjct: 45121 ggaggaggatgattctcttgat 45142
>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete sequence Length = 77923 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 ggaggaggatgattctcttgat 262 |||||||||||||||||||||| Sbjct: 49449 ggaggaggatgattctcttgat 49428
>dbj|AB000798.1| Arabidopsis thaliana mRNA for NPK1-related protein kinase 2, partial cds Length = 2193 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 241 ggaggaggatgattctcttgat 262 |||||||||||||||||||||| Sbjct: 59 ggaggaggatgattctcttgat 38
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 108 attacagcataaatatataaag 129 |||||||||||||||||||||| Sbjct: 127685 attacagcataaatatataaag 127706
>gb|AC154800.2| Mus musculus BAC clone RP24-496O9 from 14, complete sequence Length = 175264 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 tttacttgaaagcataaatcaagaag 329 ||||||||||||||||||| |||||| Sbjct: 68064 tttacttgaaagcataaataaagaag 68089
>gb|AC113289.12| Mus musculus chromosome 15, clone RP23-414M11, complete sequence Length = 211054 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 253 ttctcttgatggtgtgtcttaagc 276 ||||||||||||| |||||||||| Sbjct: 78785 ttctcttgatggtttgtcttaagc 78762
>ref|XM_760534.1| Theileria parva strain Muguga chromosome 1 kinase binding protein (TP01_0100) partial mRNA Length = 2109 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 acagtttacttgaaagcata 319 |||||||||||||||||||| Sbjct: 1684 acagtttacttgaaagcata 1703
>emb|CR352307.11| Zebrafish DNA sequence from clone DKEY-81P21 in linkage group 7, complete sequence Length = 116787 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tttacttgaaagcataaatc 323 |||||||||||||||||||| Sbjct: 114939 tttacttgaaagcataaatc 114920
>emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 in linkage group 7, complete sequence Length = 182186 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tttacttgaaagcataaatc 323 |||||||||||||||||||| Sbjct: 182035 tttacttgaaagcataaatc 182054
>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence Length = 185193 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 atcgcgggggaggaggatga 252 |||||||||||||||||||| Sbjct: 125942 atcgcgggggaggaggatga 125961
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 gccatggaggggagttttgccagg 298 ||||||||| |||||||||||||| Sbjct: 16692111 gccatggagcggagttttgccagg 16692088
>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence Length = 191731 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 atcgcgggggaggaggatga 252 |||||||||||||||||||| Sbjct: 15371 atcgcgggggaggaggatga 15390
>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664F03 Length = 184242 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 gccatggaggggagttttgccagg 298 ||||||||| |||||||||||||| Sbjct: 43598 gccatggagcggagttttgccagg 43575
>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185068 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 acatattacagcataaatat 123 |||||||||||||||||||| Sbjct: 82464 acatattacagcataaatat 82445
>emb|BX511298.10| Zebrafish DNA sequence from clone DKEY-210E13 in linkage group 4, complete sequence Length = 217817 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ctataatttacacagcttaa 164 |||||||||||||||||||| Sbjct: 70060 ctataatttacacagcttaa 70079
>gb|AC102562.13| Mus musculus chromosome 18, clone RP23-205H1, complete sequence Length = 210975 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ttctcttgatggtgtgtctt 272 |||||||||||||||||||| Sbjct: 61465 ttctcttgatggtgtgtctt 61446
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agtttacttgaaagcataaa 321 |||||||||||||||||||| Sbjct: 551234 agtttacttgaaagcataaa 551253
>emb|AL807801.3| Mouse DNA sequence from clone RP23-235A15 on chromosome 2, complete sequence Length = 158498 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 taaaggtgtctattgggaaa 144 |||||||||||||||||||| Sbjct: 11734 taaaggtgtctattgggaaa 11715 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,472,686 Number of Sequences: 3902068 Number of extensions: 3472686 Number of successful extensions: 65995 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65925 Number of HSP's gapped (non-prelim): 70 length of query: 353 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 331 effective length of database: 17,147,199,772 effective search space: 5675723124532 effective search space used: 5675723124532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)