ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_104370.3| Arabidopsis thaliana ANP2; kinase AT1G54960 (AN... 44 0.30
2gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosom... 44 0.30
3gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, c... 44 0.30
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
5gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14... 44 0.30
6gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24... 44 0.30
7dbj|AB000798.1| Arabidopsis thaliana mRNA for NPK1-related prote... 44 0.30
8dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
9gb|AC154800.2| Mus musculus BAC clone RP24-496O9 from 14, comple... 44 0.30
10gb|AC113289.12| Mus musculus chromosome 15, clone RP23-414M11, c... 40 4.7
11ref|XM_760534.1| Theileria parva strain Muguga chromosome 1 kina... 40 4.7
12emb|CR352307.11| Zebrafish DNA sequence from clone DKEY-81P21 in... 40 4.7
13emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 i... 40 4.7
14gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, com... 40 4.7
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
16gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, comp... 40 4.7
17dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
18gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Canc... 40 4.7
19emb|BX511298.10| Zebrafish DNA sequence from clone DKEY-210E13 i... 40 4.7
20gb|AC102562.13| Mus musculus chromosome 18, clone RP23-205H1, co... 40 4.7
21gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 40 4.7
22emb|AL807801.3| Mouse DNA sequence from clone RP23-235A15 on chr... 40 4.7

>ref|NM_104370.3| Arabidopsis thaliana ANP2; kinase AT1G54960 (ANP2) mRNA, complete
           cds
          Length = 2182

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 241 ggaggaggatgattctcttgat 262
           ||||||||||||||||||||||
Sbjct: 59  ggaggaggatgattctcttgat 38



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>gb|AC138654.4| Mus musculus BAC clone RP23-344O11 from chromosome 5, complete sequence
          Length = 198036

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 104   acatattacagcataaatatat 125
             ||||||||||||||||||||||
Sbjct: 64588 acatattacagcataaatatat 64567



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>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 88     tagttacttacatacaacatat 109
              ||||||||||||||||||||||
Sbjct: 116716 tagttacttacatacaacatat 116695



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 108     attacagcataaatatataaag 129
               ||||||||||||||||||||||
Sbjct: 3649179 attacagcataaatatataaag 3649200



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>gb|AC069144.9|AC069144 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete
             sequence
          Length = 102135

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 241   ggaggaggatgattctcttgat 262
             ||||||||||||||||||||||
Sbjct: 45121 ggaggaggatgattctcttgat 45142



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>gb|AC064840.2|AC064840 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete
             sequence
          Length = 77923

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 241   ggaggaggatgattctcttgat 262
             ||||||||||||||||||||||
Sbjct: 49449 ggaggaggatgattctcttgat 49428



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>dbj|AB000798.1| Arabidopsis thaliana mRNA for NPK1-related protein kinase 2,
           partial cds
          Length = 2193

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 241 ggaggaggatgattctcttgat 262
           ||||||||||||||||||||||
Sbjct: 59  ggaggaggatgattctcttgat 38



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>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0577B11
          Length = 180355

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 108    attacagcataaatatataaag 129
              ||||||||||||||||||||||
Sbjct: 127685 attacagcataaatatataaag 127706



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>gb|AC154800.2| Mus musculus BAC clone RP24-496O9 from 14, complete sequence
          Length = 175264

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 304   tttacttgaaagcataaatcaagaag 329
             ||||||||||||||||||| ||||||
Sbjct: 68064 tttacttgaaagcataaataaagaag 68089



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>gb|AC113289.12| Mus musculus chromosome 15, clone RP23-414M11, complete sequence
          Length = 211054

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 253   ttctcttgatggtgtgtcttaagc 276
             ||||||||||||| ||||||||||
Sbjct: 78785 ttctcttgatggtttgtcttaagc 78762



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>ref|XM_760534.1| Theileria parva strain Muguga chromosome 1 kinase binding protein
            (TP01_0100) partial mRNA
          Length = 2109

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  acagtttacttgaaagcata 319
            ||||||||||||||||||||
Sbjct: 1684 acagtttacttgaaagcata 1703



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>emb|CR352307.11| Zebrafish DNA sequence from clone DKEY-81P21 in linkage group 7, complete
              sequence
          Length = 116787

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    tttacttgaaagcataaatc 323
              ||||||||||||||||||||
Sbjct: 114939 tttacttgaaagcataaatc 114920



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>emb|BX119977.10| Zebrafish DNA sequence from clone CH211-198A3 in linkage group 7,
              complete sequence
          Length = 182186

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    tttacttgaaagcataaatc 323
              ||||||||||||||||||||
Sbjct: 182035 tttacttgaaagcataaatc 182054



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>gb|AC092135.4| Homo sapiens chromosome 16 clone RP11-274A11, complete sequence
          Length = 185193

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    atcgcgggggaggaggatga 252
              ||||||||||||||||||||
Sbjct: 125942 atcgcgggggaggaggatga 125961



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      gccatggaggggagttttgccagg 298
                ||||||||| ||||||||||||||
Sbjct: 16692111 gccatggagcggagttttgccagg 16692088



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>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence
          Length = 191731

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   atcgcgggggaggaggatga 252
             ||||||||||||||||||||
Sbjct: 15371 atcgcgggggaggaggatga 15390



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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   gccatggaggggagttttgccagg 298
             ||||||||| ||||||||||||||
Sbjct: 43598 gccatggagcggagttttgccagg 43575



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>gb|AC157093.4| Mus musculus 6 BAC RP24-338D12 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 185068

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   acatattacagcataaatat 123
             ||||||||||||||||||||
Sbjct: 82464 acatattacagcataaatat 82445



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>emb|BX511298.10| Zebrafish DNA sequence from clone DKEY-210E13 in linkage group 4,
             complete sequence
          Length = 217817

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ctataatttacacagcttaa 164
             ||||||||||||||||||||
Sbjct: 70060 ctataatttacacagcttaa 70079



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>gb|AC102562.13| Mus musculus chromosome 18, clone RP23-205H1, complete sequence
          Length = 210975

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ttctcttgatggtgtgtctt 272
             ||||||||||||||||||||
Sbjct: 61465 ttctcttgatggtgtgtctt 61446



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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    agtttacttgaaagcataaa 321
              ||||||||||||||||||||
Sbjct: 551234 agtttacttgaaagcataaa 551253



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>emb|AL807801.3| Mouse DNA sequence from clone RP23-235A15 on chromosome 2, complete
             sequence
          Length = 158498

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   taaaggtgtctattgggaaa 144
             ||||||||||||||||||||
Sbjct: 11734 taaaggtgtctattgggaaa 11715


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,472,686
Number of Sequences: 3902068
Number of extensions: 3472686
Number of successful extensions: 65995
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65925
Number of HSP's gapped (non-prelim): 70
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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