>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 115 SYRHSAQHHYPDTRHIAHTHMIPPWTSN*SSTQTEPSIQPSLGMPLVVQ---SLELGVSG 285
           S +H  QHH+P+    A    +PP     SS Q  P+I P  G+        SL L   G
Sbjct: 176 SQQHQQQHHHPNPFVAASAPSLPPPP---SSLQAPPAITPIAGLSAPAPASGSLPLSAGG 232

Query: 286 I 288
           I
Sbjct: 233 I 233

>KN1_MAIZE (P24345) Homeotic protein knotted-1|
          Length = 359

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 91  QHF*TCKHSYRHS-AQHHYPDTRHIAHTHMIPPWTSN*SSTQTE-PSIQPSLGMPLVVQS 264
           QHF     S+ H   QHH+       H H   PW S+ S+     P   PS G+PL + +
Sbjct: 6   QHFGVGASSHGHGHGQHHH-------HHHHHHPWASSLSAVVAPLPPQPPSAGLPLTLNT 58

Query: 265 L 267
           +
Sbjct: 59  V 59

>MTRM_DROYA (P83733) Protein matrimony (Cell cycle arrest protein D52)|
          Length = 219

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 112 HSYRHSAQHHYPDTRHIAHTHMIPP 186
           H + H  QHH+   +HI  T + PP
Sbjct: 79  HPHPHQHQHHHHHHKHIHRTQLKPP 103

>CR023_HUMAN (Q8NB54) Protein C18orf23|
          Length = 160

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 226 CWVPFAYCFSYSSREESCVCGRYALYQDNGVVRCACSCVCTF 101
           C  P  YC ++ +   +C+C   A      +  C C CVC +
Sbjct: 26  CASPLCYCPAHPA-PRNCLCMTVAYTGSRCLGACVCVCVCLY 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,659,226
Number of Sequences: 219361
Number of extensions: 1055880
Number of successful extensions: 3072
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3044
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)