Clone Name | rbastl14d01 |
---|---|
Clone Library Name | barley_pub |
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 |||||||||||| ||||||||||||||||||| Sbjct: 85799 gcatgaaaccatcaaaaattatagatacgttg 85830 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 |||||||||||| ||||||||||||||||||| Sbjct: 41605 gcatgaaaccatcaaaaattatagatacgttg 41574 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| |||||| ||||||||||||||||||| Sbjct: 48218 gcatggaaccatcaaaaattatagatacgttg 48249 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 catgaaaccatgaaaaattatagatacgttga 33 ||||||||||| ||||||||| ||||||||| Sbjct: 37207 catgaaaccatcaaaaattatcaatacgttga 37176 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||||||| || ||||||| ||||||||||| Sbjct: 8505 gcatgaaacaataaaaaattgtagatacgttg 8536
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| |||||||||||||||||||||||||| Sbjct: 30345 gcatggaaccatgaaaaattatagatacgttg 30314 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 |||||||||||| ||||||||||||||||||| Sbjct: 1955 gcatgaaaccataaaaaattatagatacgttg 1924 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 24631 tgaaaccataaaaaattatagatacgtt 24604 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 18035 tgaaaccatcaaaaattatagatacgtt 18008
>gb|AF509773.1| Hordeum vulgare subsp. vulgare isolate NRG050 Rpg1 region, genomic sequence Length = 2505 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgtt 31 |||||||||||| |||||||||||||||||| Sbjct: 380 gcatgaaaccatcaaaaattatagatacgtt 410
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgtt 31 |||||||||||| |||||||||||||||||| Sbjct: 101131 gcatgaaaccatcaaaaattatagatacgtt 101101
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgtt 31 |||||||||||| |||||||||||||||||| Sbjct: 12166 gcatgaaaccatcaaaaattatagatacgtt 12136 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 2 catgaaaccatgaaaaattatagatacgtt 31 ||||||||||| |||||||||||||||||| Sbjct: 30859 catgaaaccatcaaaaattatagatacgtt 30888 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 2 catgaaaccatgaaaaattatagatacgtt 31 ||||||||||| |||||||||||||||||| Sbjct: 15366 catgaaaccatcaaaaattatagatacgtt 15395 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 92125 tgaaaccatcaaaaattatagatacgtt 92098 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 85413 tgaaaccatcaaaaattatagatacgtt 85386 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 55543 gcatggaacaatcaaaaattatagatacgttg 55574 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 50248 gcatggaacaatcaaaaattatagatacgttg 50279
>gb|AY641406.1| Hordeum vulgare subsp. vulgare putative NBS-LRR protein-like gene, complete sequence Length = 3944 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttgaa 34 ||||| |||||| ||||||||||||||||||||| Sbjct: 3549 gcatggaaccatcaaaaattatagatacgttgaa 3516
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacg 29 ||||||||| ||||||||||||||||||| Sbjct: 174012 gcatgaaacaatgaaaaattatagatacg 174040 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 aaaaattatagatacgttgaa 34 ||||||||||||||||||||| Sbjct: 24733 aaaaattatagatacgttgaa 24753 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 109324 gcatggaacaataaaaaattatagatacgttg 109293
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 77187 tgaaaccatcaaaaattatagatacgtt 77160
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 |||||||||||| ||||||| ||||||||||| Sbjct: 38887 gcatgaaaccatcaaaaattgtagatacgttg 38918 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 |||||||||||| |||||| ||||||||||| Sbjct: 78203 gcatgaaaccatcgaaaattgtagatacgttg 78234
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||||||| || ||||||||||||||||||| Sbjct: 85957 gcatgaaacaataaaaaattatagatacgttg 85926
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 257913 tgaaaccatcaaaaattatagatacgtt 257940 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| ||||| |||||||||||| Sbjct: 251403 tgaaaccatcaaaaaatatagatacgtt 251430
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 48.1 bits (24), Expect = 0.023 Identities = 27/28 (96%) Strand = Plus / Plus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 ||||||||| |||||||||||||||||| Sbjct: 28172 tgaaaccatcaaaaattatagatacgtt 28199 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 5 gaaaccatgaaaaattatagatacgtt 31 |||||||| |||||||||||||||||| Sbjct: 33362 gaaaccatcaaaaattatagatacgtt 33388 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 tgaaaccatgaaaaattatagatacgtt 31 |||||| || |||||||||||||||||| Sbjct: 14417 tgaaactatcaaaaattatagatacgtt 14390
>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene, complete cds Length = 15688 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgtt 31 ||||| |||||| |||||||||||||||||| Sbjct: 394 gcatggaaccatcaaaaattatagatacgtt 424
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacg 29 ||||||||| || |||||||||||||||| Sbjct: 134255 gcatgaaacaatcaaaaattatagatacg 134227 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 148952 gcatggaacaataaaaaattatagatacgttg 148921
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacg 29 ||||||||| || |||||||||||||||| Sbjct: 107642 gcatgaaacaatcaaaaattatagatacg 107614
>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence Length = 202089 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 164 cccacacacacatgattcctc 184 ||||||||||||||||||||| Sbjct: 143226 cccacacacacatgattcctc 143246
>emb|AL450997.5| Human DNA sequence from clone RP5-1086I18 on chromosome 1 Contains part of the KCND3 gene for potassium voltage-gated channel Shal-related subfamily member 3 and a novel gene, complete sequence Length = 126692 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 cccagcatccagccctccctt 240 ||||||||||||||||||||| Sbjct: 24390 cccagcatccagccctccctt 24370
>emb|AL357129.11| Human DNA sequence from clone RP11-114A21 on chromosome Xq21.31-22.1, complete sequence Length = 145380 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 327 cagcttcctcttcatttctgc 347 ||||||||||||||||||||| Sbjct: 752 cagcttcctcttcatttctgc 772
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 2 catgaaaccatgaaaaattatagatacg 29 |||||||| || |||||||||||||||| Sbjct: 90261 catgaaacaataaaaaattatagatacg 90288
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 153079 gcatggaacaataaaaaattatagatacgttg 153048
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 106628 gcatggaacaatcaaaaattatagatacgttg 106597
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||||| | || ||||||||||||||||||| Sbjct: 16684 gcatgaagcaatcaaaaattatagatacgttg 16653
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||||||| || |||||||||||||| |||| Sbjct: 220201 gcatgaaacaatcaaaaattatagatatgttg 220232 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 6339 gcatggaacaatcaaaaattatagatacgttg 6308
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 23938 gcatggaacaatcaaaaattatagatacgttg 23969
>ref|XM_361649.1| Magnaporthe grisea 70-15 hypothetical protein (MG04123.4) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 gctcctccgcctccatgtgccagc 382 ||||||||||| |||||||||||| Sbjct: 1715 gctcctccgccgccatgtgccagc 1692
>emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on chromosome 6, complete sequence Length = 52666 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 51217 cctcagcttccccttcatttcagcccat 51190
>emb|CR708314.2|CNS0G9HI Tetraodon nigroviridis full-length cDNA Length = 499 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 atcaaaccttttagcaacat 96 |||||||||||||||||||| Sbjct: 333 atcaaaccttttagcaacat 352
>emb|AL773589.3| Human DNA sequence from clone DAQB-196C18 on chromosome 6 Contains the central part of the DDR1 gene for discoidin domain receptor family, member 1, and no CpG islands, complete sequence Length = 15168 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 8367 cctcagcttccccttcatttcagcccat 8340
>emb|AL662870.16| Human DNA sequence from clone XXbac-70P20 on chromosome 6 contains the DDR1 gene for discoidin domain receptor family, member 1, a putative novel transcript and two CpG islands, complete sequence Length = 61698 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 44099 cctcagcttccccttcatttcagcccat 44072
>emb|AL662854.7| Human DNA sequence from clone XXbac-105N19 on chromosome 6 contains the DDR1 gene for discoidin domain receptor family, member 1, the GTF2H4 gene for general transcrition factor IIH, polypeptide 4, 52kDa, the gene for KIAA1885 protein, two putative novel transcripts, the gene for DPCR1 protein and four CpG islands, complete sequence Length = 84474 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 15234 cctcagcttccccttcatttcagcccat 15207
>emb|AL031657.5|HS28F12 Human DNA sequence from clone RP1-28F12 on chromosome 20q11.22-12 Contains the 5' end of the PPP1R16B gene for protein phosphatase 1 regulatory (inhibitory) subunit 16B and a CpG island, complete sequence Length = 120630 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgcacctcagcttcctcttc 339 |||||||||||||||||||| Sbjct: 83983 tgcacctcagcttcctcttc 83964
>emb|CR378669.1| Photobacterium profundum SS9; segment 7/12 Length = 349285 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tgaaagagccctcaagcaaa 50 |||||||||||||||||||| Sbjct: 102346 tgaaagagccctcaagcaaa 102327
>emb|CR759747.7| Human DNA sequence from clone DADB-160J14 on chromosome 6, complete sequence Length = 114883 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 6435 cctcagcttccccttcatttcagcccat 6408
>dbj|AB210150.1| Pan troglodytes DDR1 gene for discoidin receptor tyrosine kinase isoform b, complete cds, cell_line: Ericka Length = 14676 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 3269 cctcagcttccccttcatttcagcccat 3242
>dbj|AB210149.1| Pan troglodytes DDR1 gene for discoidin receptor tyrosine kinase isoform b, complete cds, cell_line: Borie Length = 14676 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 3269 cctcagcttccccttcatttcagcccat 3242
>dbj|AB202100.1| Homo sapiens DDR1 gene for discoidin domain receptor family, member 1, complete cds Length = 14673 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 3247 cctcagcttccccttcatttcagcccat 3220
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 16710 gcatggaacaatcaaaaattatagatacgttg 16741
>emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chromosome 6, complete sequence Length = 110208 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 64498 cctcagcttccccttcatttcagcccat 64471
>gb|AC006262.2|AC006262 Homo sapiens chromosome 19, BAC BC264576 (CTC-297N14), complete sequence Length = 107573 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tcatttctgcccatgttcag 357 |||||||||||||||||||| Sbjct: 82269 tcatttctgcccatgttcag 82288
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 44673 gcatggaacaataaaaaattatagatacgttg 44642 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 42224 gcatggaacaatcaaaaattatagatacgttg 42255
>gb|AC148705.1| Macaca mulatta Major Histocompatibility Complex MMU348N13, complete sequence Length = 186491 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 176658 cctcagcttccccttcatttcagcccat 176631
>gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex BAC MMU337E21, complete sequence Length = 147539 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 78128 cctcagcttccccttcatttcagcccat 78101
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 13881 gcatggaacaataaaaaattatagatacgttg 13850
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 1549395 cctcagcttccccttcatttcagcccat 1549422
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 1051450 cctcagcttccccttcatttcagcccat 1051477
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 625581 cctcagcttccccttcatttcagcccat 625608
>gb|AF078801.1|AF078801 Hordeum vulgare degenerate retrotransposon cereba polyprotein pseudogene, partial sequence Length = 15230 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 gcatgaaaccatgaaaaattatagatac 28 ||||| |||||| ||||||||||||||| Sbjct: 13135 gcatggaaccatcaaaaattatagatac 13162
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 1 gcatgaaaccatgaaaaattatagatacgttg 32 ||||| ||| || ||||||||||||||||||| Sbjct: 183111 gcatggaacaataaaaaattatagatacgttg 183080
>dbj|AB088102.1| Homo sapiens DDR gene for receptor tyrosine kinase, complete cds Length = 14673 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 3247 cctcagcttccccttcatttcagcccat 3220
>gb|AC004211.1|AC004211 Homo sapiens clone UWGC:Y67C112 from 6p21, complete sequence Length = 48731 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 33114 cctcagcttccccttcatttcagcccat 33141
>dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:832F2, complete sequence Length = 112018 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 324 cctcagcttcctcttcatttctgcccat 351 ||||||||||| ||||||||| |||||| Sbjct: 26480 cctcagcttccccttcatttcagcccat 26507 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,390,983 Number of Sequences: 3902068 Number of extensions: 4390983 Number of successful extensions: 75140 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74985 Number of HSP's gapped (non-prelim): 155 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)