ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 56 1e-04
2gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 56 1e-04
3gb|AF509773.1| Hordeum vulgare subsp. vulgare isolate NRG050 Rpg... 54 4e-04
4gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 54 4e-04
5gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 54 4e-04
6gb|AY641406.1| Hordeum vulgare subsp. vulgare putative NBS-LRR p... 52 0.001
7gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 ge... 50 0.006
8gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 48 0.023
9gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 48 0.023
10gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene,... 48 0.023
11gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 48 0.023
12gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 48 0.023
13gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) ... 46 0.092
14gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 42 1.4
15gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece 42 1.4
16gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complet... 42 1.4
17emb|AL450997.5| Human DNA sequence from clone RP5-1086I18 on chr... 42 1.4
18emb|AL357129.11| Human DNA sequence from clone RP11-114A21 on ch... 42 1.4
19gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 40 5.7
20gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 40 5.7
21gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 40 5.7
22gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 compl... 40 5.7
23gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 40 5.7
24gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 40 5.7
25ref|XM_361649.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.7
26emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on ch... 40 5.7
27emb|CR708314.2|CNS0G9HI Tetraodon nigroviridis full-length cDNA 40 5.7
28emb|AL773589.3| Human DNA sequence from clone DAQB-196C18 on chr... 40 5.7
29emb|AL662870.16| Human DNA sequence from clone XXbac-70P20 on ch... 40 5.7
30emb|AL662854.7| Human DNA sequence from clone XXbac-105N19 on ch... 40 5.7
31emb|AL031657.5|HS28F12 Human DNA sequence from clone RP1-28F12 o... 40 5.7
32emb|CR378669.1| Photobacterium profundum SS9; segment 7/12 40 5.7
33emb|CR759747.7| Human DNA sequence from clone DADB-160J14 on chr... 40 5.7
34dbj|AB210150.1| Pan troglodytes DDR1 gene for discoidin receptor... 40 5.7
35dbj|AB210149.1| Pan troglodytes DDR1 gene for discoidin receptor... 40 5.7
36dbj|AB202100.1| Homo sapiens DDR1 gene for discoidin domain rece... 40 5.7
37gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 5.7
38emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chro... 40 5.7
39gb|AC006262.2|AC006262 Homo sapiens chromosome 19, BAC BC264576 ... 40 5.7
40gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 40 5.7
41gb|AC148705.1| Macaca mulatta Major Histocompatibility Complex M... 40 5.7
42gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.7
43gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, c... 40 5.7
44dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 40 5.7
45dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 5.7
46dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 5.7
47gb|AF078801.1|AF078801 Hordeum vulgare degenerate retrotransposo... 40 5.7
48gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence 40 5.7
49dbj|AB088102.1| Homo sapiens DDR gene for receptor tyrosine kina... 40 5.7
50gb|AC004211.1|AC004211 Homo sapiens clone UWGC:Y67C112 from 6p21... 40 5.7
51dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 5.7

>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             |||||||||||| |||||||||||||||||||
Sbjct: 85799 gcatgaaaccatcaaaaattatagatacgttg 85830



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             |||||||||||| |||||||||||||||||||
Sbjct: 41605 gcatgaaaccatcaaaaattatagatacgttg 41574



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| |||||| |||||||||||||||||||
Sbjct: 48218 gcatggaaccatcaaaaattatagatacgttg 48249



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 2     catgaaaccatgaaaaattatagatacgttga 33
             ||||||||||| |||||||||  |||||||||
Sbjct: 37207 catgaaaccatcaaaaattatcaatacgttga 37176



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 1    gcatgaaaccatgaaaaattatagatacgttg 32
            ||||||||| || ||||||| |||||||||||
Sbjct: 8505 gcatgaaacaataaaaaattgtagatacgttg 8536



to top

>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete
             sequence
          Length = 101158

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||||||||||||||||||||||||||
Sbjct: 30345 gcatggaaccatgaaaaattatagatacgttg 30314



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 1    gcatgaaaccatgaaaaattatagatacgttg 32
            |||||||||||| |||||||||||||||||||
Sbjct: 1955 gcatgaaaccataaaaaattatagatacgttg 1924



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             ||||||||| ||||||||||||||||||
Sbjct: 24631 tgaaaccataaaaaattatagatacgtt 24604



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             ||||||||| ||||||||||||||||||
Sbjct: 18035 tgaaaccatcaaaaattatagatacgtt 18008



to top

>gb|AF509773.1| Hordeum vulgare subsp. vulgare isolate NRG050 Rpg1 region, genomic
           sequence
          Length = 2505

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 1   gcatgaaaccatgaaaaattatagatacgtt 31
           |||||||||||| ||||||||||||||||||
Sbjct: 380 gcatgaaaccatcaaaaattatagatacgtt 410



to top

>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                             
Query: 1      gcatgaaaccatgaaaaattatagatacgtt 31
              |||||||||||| ||||||||||||||||||
Sbjct: 101131 gcatgaaaccatcaaaaattatagatacgtt 101101



to top

>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 1     gcatgaaaccatgaaaaattatagatacgtt 31
             |||||||||||| ||||||||||||||||||
Sbjct: 12166 gcatgaaaccatcaaaaattatagatacgtt 12136



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 2     catgaaaccatgaaaaattatagatacgtt 31
             ||||||||||| ||||||||||||||||||
Sbjct: 30859 catgaaaccatcaaaaattatagatacgtt 30888



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 2     catgaaaccatgaaaaattatagatacgtt 31
             ||||||||||| ||||||||||||||||||
Sbjct: 15366 catgaaaccatcaaaaattatagatacgtt 15395



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             ||||||||| ||||||||||||||||||
Sbjct: 92125 tgaaaccatcaaaaattatagatacgtt 92098



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             ||||||||| ||||||||||||||||||
Sbjct: 85413 tgaaaccatcaaaaattatagatacgtt 85386



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 55543 gcatggaacaatcaaaaattatagatacgttg 55574



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 50248 gcatggaacaatcaaaaattatagatacgttg 50279



to top

>gb|AY641406.1| Hordeum vulgare subsp. vulgare putative NBS-LRR protein-like gene,
            complete sequence
          Length = 3944

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 1    gcatgaaaccatgaaaaattatagatacgttgaa 34
            ||||| |||||| |||||||||||||||||||||
Sbjct: 3549 gcatggaaccatcaaaaattatagatacgttgaa 3516



to top

>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
          Length = 215241

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 1      gcatgaaaccatgaaaaattatagatacg 29
              ||||||||| |||||||||||||||||||
Sbjct: 174012 gcatgaaacaatgaaaaattatagatacg 174040



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    aaaaattatagatacgttgaa 34
             |||||||||||||||||||||
Sbjct: 24733 aaaaattatagatacgttgaa 24753



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 1      gcatgaaaccatgaaaaattatagatacgttg 32
              ||||| ||| || |||||||||||||||||||
Sbjct: 109324 gcatggaacaataaaaaattatagatacgttg 109293



to top

>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
             locus region
          Length = 160897

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             ||||||||| ||||||||||||||||||
Sbjct: 77187 tgaaaccatcaaaaattatagatacgtt 77160



to top

>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             |||||||||||| ||||||| |||||||||||
Sbjct: 38887 gcatgaaaccatcaaaaattgtagatacgttg 38918



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||||||||||  |||||| |||||||||||
Sbjct: 78203 gcatgaaaccatcgaaaattgtagatacgttg 78234



to top

>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed
             globulin (Glo-2) gene, complete cds; HMW-glutenin
             (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and
             HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds
          Length = 102842

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||||||| || |||||||||||||||||||
Sbjct: 85957 gcatgaaacaataaaaaattatagatacgttg 85926



to top

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 4      tgaaaccatgaaaaattatagatacgtt 31
              ||||||||| ||||||||||||||||||
Sbjct: 257913 tgaaaccatcaaaaattatagatacgtt 257940



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 4      tgaaaccatgaaaaattatagatacgtt 31
              ||||||||| ||||| ||||||||||||
Sbjct: 251403 tgaaaccatcaaaaaatatagatacgtt 251430



to top

>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             ||||||||| ||||||||||||||||||
Sbjct: 28172 tgaaaccatcaaaaattatagatacgtt 28199



 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 5     gaaaccatgaaaaattatagatacgtt 31
             |||||||| ||||||||||||||||||
Sbjct: 33362 gaaaccatcaaaaattatagatacgtt 33388



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 4     tgaaaccatgaaaaattatagatacgtt 31
             |||||| || ||||||||||||||||||
Sbjct: 14417 tgaaactatcaaaaattatagatacgtt 14390



to top

>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene,
           complete cds
          Length = 15688

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 1   gcatgaaaccatgaaaaattatagatacgtt 31
           ||||| |||||| ||||||||||||||||||
Sbjct: 394 gcatggaaccatcaaaaattatagatacgtt 424



to top

>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 1      gcatgaaaccatgaaaaattatagatacg 29
              ||||||||| || ||||||||||||||||
Sbjct: 134255 gcatgaaacaatcaaaaattatagatacg 134227



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 1      gcatgaaaccatgaaaaattatagatacgttg 32
              ||||| ||| || |||||||||||||||||||
Sbjct: 148952 gcatggaacaataaaaaattatagatacgttg 148921



to top

>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece
          Length = 120562

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 1      gcatgaaaccatgaaaaattatagatacg 29
              ||||||||| || ||||||||||||||||
Sbjct: 107642 gcatgaaacaatcaaaaattatagatacg 107614



to top

>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence
          Length = 202089

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 164    cccacacacacatgattcctc 184
              |||||||||||||||||||||
Sbjct: 143226 cccacacacacatgattcctc 143246



to top

>emb|AL450997.5| Human DNA sequence from clone RP5-1086I18 on chromosome 1 Contains part
             of the KCND3 gene for potassium voltage-gated channel
             Shal-related subfamily member 3 and a novel gene, complete
             sequence
          Length = 126692

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   cccagcatccagccctccctt 240
             |||||||||||||||||||||
Sbjct: 24390 cccagcatccagccctccctt 24370



to top

>emb|AL357129.11| Human DNA sequence from clone RP11-114A21 on chromosome
           Xq21.31-22.1, complete sequence
          Length = 145380

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 327 cagcttcctcttcatttctgc 347
           |||||||||||||||||||||
Sbjct: 752 cagcttcctcttcatttctgc 772



to top

>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 2     catgaaaccatgaaaaattatagatacg 29
             |||||||| || ||||||||||||||||
Sbjct: 90261 catgaaacaataaaaaattatagatacg 90288



to top

>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
              sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
              (WM1.12) genes, complete cds; transposons Ophelia2,
              Angela3s, and XJ3, complete sequence; LRR protein WM1.3
              (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1,
              Jody, Angela, and XJ and Stowaway MITE, complete sequence;
              LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1)
              genes, complete cds; transposons XJ, XA, Angela, and Fred
              and WM1.11 gene, complete sequence; RPM1-like sequence and
              LRR protein WM1.10 (WM1.10) genes, complete cds; and
              transposon XJ, complete sequence
          Length = 198649

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 1      gcatgaaaccatgaaaaattatagatacgttg 32
              ||||| ||| || |||||||||||||||||||
Sbjct: 153079 gcatggaacaataaaaaattatagatacgttg 153048



to top

>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 1      gcatgaaaccatgaaaaattatagatacgttg 32
              ||||| ||| || |||||||||||||||||||
Sbjct: 106628 gcatggaacaatcaaaaattatagatacgttg 106597



to top

>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence
          Length = 168746

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||||| | || |||||||||||||||||||
Sbjct: 16684 gcatgaagcaatcaaaaattatagatacgttg 16653



to top

>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 1      gcatgaaaccatgaaaaattatagatacgttg 32
              ||||||||| || |||||||||||||| ||||
Sbjct: 220201 gcatgaaacaatcaaaaattatagatatgttg 220232



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 1    gcatgaaaccatgaaaaattatagatacgttg 32
            ||||| ||| || |||||||||||||||||||
Sbjct: 6339 gcatggaacaatcaaaaattatagatacgttg 6308



to top

>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 23938 gcatggaacaatcaaaaattatagatacgttg 23969



to top

>ref|XM_361649.1| Magnaporthe grisea 70-15 hypothetical protein (MG04123.4) partial
            mRNA
          Length = 3087

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 359  gctcctccgcctccatgtgccagc 382
            ||||||||||| ||||||||||||
Sbjct: 1715 gctcctccgccgccatgtgccagc 1692



to top

>emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on chromosome 6, complete
             sequence
          Length = 52666

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 51217 cctcagcttccccttcatttcagcccat 51190



to top

>emb|CR708314.2|CNS0G9HI Tetraodon nigroviridis full-length cDNA
          Length = 499

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  atcaaaccttttagcaacat 96
           ||||||||||||||||||||
Sbjct: 333 atcaaaccttttagcaacat 352



to top

>emb|AL773589.3| Human DNA sequence from clone DAQB-196C18 on chromosome 6 Contains
            the central part of the DDR1 gene for discoidin domain
            receptor family, member 1, and no CpG islands, complete
            sequence
          Length = 15168

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 324  cctcagcttcctcttcatttctgcccat 351
            ||||||||||| ||||||||| ||||||
Sbjct: 8367 cctcagcttccccttcatttcagcccat 8340



to top

>emb|AL662870.16| Human DNA sequence from clone XXbac-70P20 on chromosome 6 contains the
             DDR1 gene for discoidin domain receptor family, member 1,
             a putative novel transcript and two CpG islands, complete
             sequence
          Length = 61698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 44099 cctcagcttccccttcatttcagcccat 44072



to top

>emb|AL662854.7| Human DNA sequence from clone XXbac-105N19 on chromosome 6 contains the
             DDR1 gene for discoidin domain receptor family, member 1,
             the GTF2H4 gene for general transcrition factor IIH,
             polypeptide 4, 52kDa, the gene for KIAA1885 protein, two
             putative novel transcripts, the gene for DPCR1 protein and
             four CpG islands, complete sequence
          Length = 84474

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 15234 cctcagcttccccttcatttcagcccat 15207



to top

>emb|AL031657.5|HS28F12 Human DNA sequence from clone RP1-28F12 on chromosome 20q11.22-12
             Contains the 5' end of the PPP1R16B gene for protein
             phosphatase 1 regulatory (inhibitory) subunit 16B and a
             CpG island, complete sequence
          Length = 120630

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   tgcacctcagcttcctcttc 339
             ||||||||||||||||||||
Sbjct: 83983 tgcacctcagcttcctcttc 83964



to top

>emb|CR378669.1| Photobacterium profundum SS9; segment 7/12
          Length = 349285

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     tgaaagagccctcaagcaaa 50
              ||||||||||||||||||||
Sbjct: 102346 tgaaagagccctcaagcaaa 102327



to top

>emb|CR759747.7| Human DNA sequence from clone DADB-160J14 on chromosome 6, complete
            sequence
          Length = 114883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 324  cctcagcttcctcttcatttctgcccat 351
            ||||||||||| ||||||||| ||||||
Sbjct: 6435 cctcagcttccccttcatttcagcccat 6408



to top

>dbj|AB210150.1| Pan troglodytes DDR1 gene for discoidin receptor tyrosine kinase
            isoform b, complete cds, cell_line: Ericka
          Length = 14676

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 324  cctcagcttcctcttcatttctgcccat 351
            ||||||||||| ||||||||| ||||||
Sbjct: 3269 cctcagcttccccttcatttcagcccat 3242



to top

>dbj|AB210149.1| Pan troglodytes DDR1 gene for discoidin receptor tyrosine kinase
            isoform b, complete cds, cell_line: Borie
          Length = 14676

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 324  cctcagcttcctcttcatttctgcccat 351
            ||||||||||| ||||||||| ||||||
Sbjct: 3269 cctcagcttccccttcatttcagcccat 3242



to top

>dbj|AB202100.1| Homo sapiens DDR1 gene for discoidin domain receptor family, member
            1, complete cds
          Length = 14673

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 324  cctcagcttcctcttcatttctgcccat 351
            ||||||||||| ||||||||| ||||||
Sbjct: 3247 cctcagcttccccttcatttcagcccat 3220



to top

>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 16710 gcatggaacaatcaaaaattatagatacgttg 16741



to top

>emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chromosome 6, complete
             sequence
          Length = 110208

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 64498 cctcagcttccccttcatttcagcccat 64471



to top

>gb|AC006262.2|AC006262 Homo sapiens chromosome 19, BAC BC264576 (CTC-297N14), complete
             sequence
          Length = 107573

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   tcatttctgcccatgttcag 357
             ||||||||||||||||||||
Sbjct: 82269 tcatttctgcccatgttcag 82288



to top

>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 44673 gcatggaacaataaaaaattatagatacgttg 44642



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 42224 gcatggaacaatcaaaaattatagatacgttg 42255



to top

>gb|AC148705.1| Macaca mulatta Major Histocompatibility Complex MMU348N13, complete
              sequence
          Length = 186491

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 324    cctcagcttcctcttcatttctgcccat 351
              ||||||||||| ||||||||| ||||||
Sbjct: 176658 cctcagcttccccttcatttcagcccat 176631



to top

>gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex BAC MMU337E21, complete
             sequence
          Length = 147539

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 78128 cctcagcttccccttcatttcagcccat 78101



to top

>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 1     gcatgaaaccatgaaaaattatagatacgttg 32
             ||||| ||| || |||||||||||||||||||
Sbjct: 13881 gcatggaacaataaaaaattatagatacgttg 13850



to top

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 324     cctcagcttcctcttcatttctgcccat 351
               ||||||||||| ||||||||| ||||||
Sbjct: 1549395 cctcagcttccccttcatttcagcccat 1549422



to top

>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 324     cctcagcttcctcttcatttctgcccat 351
               ||||||||||| ||||||||| ||||||
Sbjct: 1051450 cctcagcttccccttcatttcagcccat 1051477



to top

>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 324    cctcagcttcctcttcatttctgcccat 351
              ||||||||||| ||||||||| ||||||
Sbjct: 625581 cctcagcttccccttcatttcagcccat 625608



to top

>gb|AF078801.1|AF078801 Hordeum vulgare degenerate retrotransposon cereba polyprotein
             pseudogene, partial sequence
          Length = 15230

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 1     gcatgaaaccatgaaaaattatagatac 28
             ||||| |||||| |||||||||||||||
Sbjct: 13135 gcatggaaccatcaaaaattatagatac 13162



to top

>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 1      gcatgaaaccatgaaaaattatagatacgttg 32
              ||||| ||| || |||||||||||||||||||
Sbjct: 183111 gcatggaacaataaaaaattatagatacgttg 183080



to top

>dbj|AB088102.1| Homo sapiens DDR gene for receptor tyrosine kinase, complete cds
          Length = 14673

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 324  cctcagcttcctcttcatttctgcccat 351
            ||||||||||| ||||||||| ||||||
Sbjct: 3247 cctcagcttccccttcatttcagcccat 3220



to top

>gb|AC004211.1|AC004211 Homo sapiens clone UWGC:Y67C112 from 6p21, complete sequence
          Length = 48731

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 33114 cctcagcttccccttcatttcagcccat 33141



to top

>dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:832F2, complete sequence
          Length = 112018

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 324   cctcagcttcctcttcatttctgcccat 351
             ||||||||||| ||||||||| ||||||
Sbjct: 26480 cctcagcttccccttcatttcagcccat 26507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,390,983
Number of Sequences: 3902068
Number of extensions: 4390983
Number of successful extensions: 75140
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74985
Number of HSP's gapped (non-prelim): 155
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top