ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX855598.22| Zebrafish DNA sequence from clone DKEY-52J13 in... 40 2.9
2emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chr... 40 2.9
3emb|AL662876.23| Mouse DNA sequence from clone RP23-288K19 on ch... 40 2.9
4emb|BX842696.13| Zebrafish DNA sequence from clone DKEY-165P1 in... 40 2.9

>emb|BX855598.22| Zebrafish DNA sequence from clone DKEY-52J13 in linkage group 13,
              complete sequence
          Length = 209449

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    tatgtagctggccaaaaaga 155
              ||||||||||||||||||||
Sbjct: 158837 tatgtagctggccaaaaaga 158818



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>emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chromosome 1 Contains the
             3' end of a novel gene, a novel gene, the 3' end of the
             SLC25A24 gene for solute carrier family 25 (mitochondrial
             carrier; phosphate carrier) member 24 and two CpG islands,
             complete sequence
          Length = 183037

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   tcagtagttcatggcaaaag 130
             ||||||||||||||||||||
Sbjct: 82034 tcagtagttcatggcaaaag 82015



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>emb|AL662876.23| Mouse DNA sequence from clone RP23-288K19 on chromosome 11 Contains the
              5' end of a novel gene, a pseudogene similar to human
              polymerase (RNA) II (DNA directed) polypeptide D POLR2D,
              two novel genes, the Xbp1 gene for X-box binding protein 1,
              the gene for a novel ankyrin repeat containing protein and
              three CpG islands, complete sequence
          Length = 232225

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     gcaacaaagtagctcagtag 117
              ||||||||||||||||||||
Sbjct: 127131 gcaacaaagtagctcagtag 127150



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>emb|BX842696.13| Zebrafish DNA sequence from clone DKEY-165P1 in linkage group 13,
             complete sequence
          Length = 216185

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   tatgtagctggccaaaaaga 155
             ||||||||||||||||||||
Sbjct: 39222 tatgtagctggccaaaaaga 39203


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,446,868
Number of Sequences: 3902068
Number of extensions: 1446868
Number of successful extensions: 103980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103973
Number of HSP's gapped (non-prelim): 7
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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