ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14c09 |
|---|---|
| Clone Library Name | barley_pub |
>MCCA_HUMAN (Q96RQ3) Methylcrotonoyl-CoA carboxylase subunit alpha,| mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (MCCase alpha subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) (3-methylcrotonyl-CoA carboxyla Length = 725 Score = 33.5 bits (75), Expect = 0.13 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = -3 Query: 204 GCGLYFRNKHHHRICRSESLLFVGLSPPRLKNLAIMSGRRKI 79 GCG N +C+ E ++F+G P ++++ I S + I Sbjct: 128 GCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSI 169
>EF2_RAT (P05197) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_PONPY (Q5R8Z3) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_MOUSE (P58252) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_MESAU (P05086) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_HUMAN (P13639) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_CRIGR (P09445) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_BOVIN (Q3SYU2) Elongation factor 2 (EF-2)| Length = 857 Score = 33.5 bits (75), Expect = 0.13 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G ++ DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>EF2_CHICK (Q90705) Elongation factor 2 (EF-2)| Length = 857 Score = 31.6 bits (70), Expect = 0.49 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ C++ G + G + DP +MM+I+K+ PT+ + Y G V G Sbjct: 362 TAQKYRCELLYEGPPDDEAAIGIKNCDPRGSLMMYISKMVPTSDKGRFYAFGRVFSGLVS 421 Query: 256 T 258 T Sbjct: 422 T 422
>RSMB_PSESM (Q88B41) Ribosomal RNA small subunit methyltransferase B (EC| 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase) Length = 448 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = +3 Query: 135 RRTEGIQSDRSYDDVYCENTTHSHLLKELHPRGGTGGVYTYLH-ESVS*KREKKLEPTLA 311 RR I+ R DD+ T LL L P GG+ Y ++ + +E LA Sbjct: 330 RRHPDIKLTRQLDDIAALATLQGELLDALWPTLQVGGMLVYATCSTLPTENTDVIEAFLA 389 Query: 312 ATKKTRELNFTG 347 T REL+ G Sbjct: 390 RTSGARELDIAG 401
>PYRFE_ANASP (Q8YSY4) PyrF/pyrE bifunctional enzyme [Includes: Orotidine| 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase); Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT) (OPRTase)] Length = 477 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = -3 Query: 195 LYFRNKHHHRICRSESLLFVGLSPPRLKNLAIMSGR 88 + F +K H I +++SLLFVGL P N +M GR Sbjct: 1 MIFFDKLHQNISQNQSLLFVGLDP----NPEMMPGR 32
>EF2_CRYPV (Q23716) Elongation factor 2 (EF-2)| Length = 832 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +1 Query: 85 SASRHYCQIFQTGRRQTDEQKGFRATDP---MMMFIAKIQPTAIY*KSYILGEVQEGCTH 255 +A ++ + G + + KG R DP + MF++K+ PT+ + Y G V G Sbjct: 337 AAQKYRVENLYEGPQDDETAKGIRNCDPDAPLCMFVSKMVPTSDKGRFYAFGRVFSGTVA 396 Query: 256 T 258 T Sbjct: 397 T 397
>ORN_FRATT (Q5NI61) Oligoribonuclease (EC 3.1.-.-)| Length = 178 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +1 Query: 160 TDPMMMFIAKIQPTAIY*KSYILGEVQEGC--THTYTNL 270 TD + IA+ +P AIY +L + E C THT T L Sbjct: 32 TDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTHTETGL 70
>PMA1_DUNAC (P54210) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 1103 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%) Frame = +3 Query: 180 YCENTTHSHLL---KELHPRGGTGGVYT 254 +C+ +TH+ +L E+ PR GT VYT Sbjct: 914 FCDYSTHNRVLFFNSEVEPRAGTESVYT 941
>MFP1_LYCES (P93203) MAR binding filament-like protein 1| Length = 697 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -3 Query: 258 SMCTPLLYLPEDVTLLVDG----CGLYFRNKHHHRICRSESLLFVGLSPPRLKNL 106 S TPLL P + + ++ N+ +C S+LFVG S L NL Sbjct: 19 SQFTPLLSCPRNTQICRKKRPVMASMHSENQKESNVCNRRSILFVGFSVLPLLNL 73
>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1910 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 162 RSYDDVYCENTTHSHLLKELHPRGGTGGVY 251 RSYD Y E HL + +HP TG Y Sbjct: 39 RSYDTAYPEQGYDRHLRERVHPAYTTGPSY 68
>TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase 5 (EC| 2.3.2.13) (Transglutaminase-5) (TGase 5) (Transglutaminase X) (TGase X) (TGX) (TG(X)) Length = 719 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Frame = -3 Query: 273 LQIRVSMCTPLLYLPEDVTLLVDGCGLYFRNKHHHRICRSESLLFVGLSPPR------LK 112 L I+V PL ED L V+G GL+ + + +F+G+ P+ L+ Sbjct: 635 LSIQVIFSNPLSEQVEDCVLTVEGSGLF----------KKQQKVFLGVLKPQHQASIILE 684 Query: 111 NLAIMSGRRKI 79 + SG+R+I Sbjct: 685 TVPFKSGQRQI 695
>CHRD_HUMAN (Q9H2X0) Chordin precursor| Length = 955 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -1 Query: 326 CFLCSCQRRF*FLFPLLAYRFV*VCVHPSCTSP 228 C LC+CQRR P+ VC PSC P Sbjct: 726 CSLCTCQRRTVICDPV-------VCPPPSCPHP 751 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,376,706 Number of Sequences: 219361 Number of extensions: 1016060 Number of successful extensions: 2444 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2408 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2444 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
