ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5) 29 3.2
2TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4 28 4.2
3SYM_ENTFA (Q837B3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 28 4.2
4CADA2_LISMO (Q60048) Probable cadmium-transporting ATPase (EC 3.... 28 7.2

>PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 710

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 48  CVRIARGPLYTGPAALLKVQEKRNEKKHIIFNYRESLVAVARLALREIEVAGAA 209
           CVR    PL  G A       + +E K I   YR+ LV +   +LR  +VA  A
Sbjct: 17  CVRPRADPLNWGKATEEMTGSQVDEVKRIGAEYRQPLVKIEGASLRIAQVAAVA 70



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>TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4|
          Length = 1199

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +3

Query: 210 HSWPELYLGRLLP*PSAYDRQRLPRLETLANRSAPSQGS 326
           HS P+L+   LL   S+Y ++   +LE+   RS+PS+ S
Sbjct: 106 HSLPDLFNSTLLYRRSSYRQKPYQQLESFCLRSSPSEKS 144



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>SYM_ENTFA (Q837B3) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 669

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 78  TGPAALLKVQEKRNEKKHIIFNYRESLVAVARL 176
           T P  L K +EKRNE + ++ +  ESL  VA L
Sbjct: 439 TAPWVLAKEEEKRNELESVMIHLAESLRIVAIL 471



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>CADA2_LISMO (Q60048) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium|
           efflux ATPase)
          Length = 711

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +1

Query: 121 KRNTSFSIIARVLLLLLGSPYGR*RWLARHIAGRSSTLAGCCHSLQLMIGKD 276
           K+N +FS++ +++ LLL  P     W+A  +A   +TL    + L+LM  KD
Sbjct: 661 KQNITFSLVIKLIALLLVIPGWLTLWIA-IMADMGATLLVTLNGLRLMKVKD 711


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,181,506
Number of Sequences: 219361
Number of extensions: 860263
Number of successful extensions: 2074
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2070
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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