Clone Name | rbastl14c05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT018899.1| Zea mays clone EL01T0207E03.d mRNA sequence Length = 1585 Score = 196 bits (99), Expect = 4e-47 Identities = 192/223 (86%) Strand = Plus / Minus Query: 219 ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 278 |||||||||| ||||| |||| ||||| |||||| || |||||| | ||||||| | Sbjct: 1389 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 1330 Query: 279 gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 338 | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| | Sbjct: 1329 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 1270 Query: 339 ctgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctgtt 398 || ||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | Sbjct: 1269 gtgcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctgct 1210 Query: 399 tgtgatgccgctcttcagttttatatttaagaggaccaacatg 441 | ||||| ||||| |||||||||||||| || ||||||||||| Sbjct: 1209 tttgatgacgctcctcagttttatatttgaggggaccaacatg 1167
>gb|AY105873.1| Zea mays PCO094136 mRNA sequence Length = 809 Score = 196 bits (99), Expect = 4e-47 Identities = 192/223 (86%) Strand = Plus / Minus Query: 219 ctctctttctcaatattgtcttccgtggttcctttctgctcggtgtgtttcctgaactta 278 |||||||||| ||||| |||| ||||| |||||| || |||||| | ||||||| | Sbjct: 575 ctctctttcttaatatattcttgcgtggctcctttttggtcggtgccatccctgaaccca 516 Query: 279 gggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactgatcacga 338 | |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| | Sbjct: 515 gagaagtcatccctacagcgctctggtataagtcatttaaccttggcatactgatcacca 456 Query: 339 ctgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagttcctgtt 398 || ||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | Sbjct: 455 gtgcaaccacagaaactccaacaataagcggaaaaactggtgctggggtcagttcctgct 396 Query: 399 tgtgatgccgctcttcagttttatatttaagaggaccaacatg 441 | ||||| ||||| |||||||||||||| || ||||||||||| Sbjct: 395 tttgatgacgctcctcagttttatatttgaggggaccaacatg 353
>ref|NM_189191.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3582 Score = 151 bits (76), Expect = 2e-33 Identities = 151/176 (85%) Strand = Plus / Minus Query: 272 gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 331 |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| ||| Sbjct: 3524 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 3465 Query: 332 atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagt 391 || || | || || || |||||||| ||||||||||| || || |||||||| || | | Sbjct: 3464 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctggagttaat 3405 Query: 392 tcctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctg 447 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 3404 tcctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctg 3349
>dbj|AK058273.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B11, full insert sequence Length = 1629 Score = 151 bits (76), Expect = 2e-33 Identities = 151/176 (85%) Strand = Plus / Minus Query: 272 gaacttagggaagtcattcctacagcgctctggtacaagtccttcaaccttggcatactg 331 |||| ||||| ||||||||| ||||| || ||||||||||| || | ||||||||| ||| Sbjct: 1183 gaacctagggtagtcattcccacagcactttggtacaagtcttttagccttggcatgctg 1124 Query: 332 atcacgactgtaacaacagaaactccaacaataagaggtaaaactggggctggggtcagt 391 || || | || || || |||||||| ||||||||||| || || |||||||| || | | Sbjct: 1123 atgaccaatgcaatcacggaaactccgacaataagaggaaatacaggggctggagttaat 1064 Query: 392 tcctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctg 447 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 1063 tcctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctg 1008
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 5e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 393 cctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctg 447 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 11024477 cctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctg 11024531 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 272 gaacttagggaagtcattcctacagcgctctggtacaagtc 312 |||| ||||| ||||||||| ||||| || ||||||||||| Sbjct: 11023970 gaacctagggtagtcattcccacagcactttggtacaagtc 11024010 Score = 40.1 bits (20), Expect = 6.0 Identities = 56/68 (82%) Strand = Plus / Plus Query: 317 aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 376 ||||||||||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct: 11024109 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 11024168 Query: 377 ggggctgg 384 |||||||| Sbjct: 11024169 ggggctgg 11024176
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 93.7 bits (47), Expect = 5e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 393 cctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctg 447 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 53359 cctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctg 53413 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 272 gaacttagggaagtcattcctacagcgctctggtacaagtc 312 |||| ||||| ||||||||| ||||| || ||||||||||| Sbjct: 52852 gaacctagggtagtcattcccacagcactttggtacaagtc 52892 Score = 40.1 bits (20), Expect = 6.0 Identities = 56/68 (82%) Strand = Plus / Plus Query: 317 aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 376 ||||||||||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct: 52991 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 53050 Query: 377 ggggctgg 384 |||||||| Sbjct: 53051 ggggctgg 53058
>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487H02 Length = 145491 Score = 93.7 bits (47), Expect = 5e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 393 cctgtttgtgatgccgctcttcagttttatatttaagaggaccaacatgaatctg 447 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 127319 cctgtttgtgatgtcgctcttcggttttatatttaagaggaccaacatgaatctg 127373 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 272 gaacttagggaagtcattcctacagcgctctggtacaagtc 312 |||| ||||| ||||||||| ||||| || ||||||||||| Sbjct: 126812 gaacctagggtagtcattcccacagcactttggtacaagtc 126852 Score = 40.1 bits (20), Expect = 6.0 Identities = 56/68 (82%) Strand = Plus / Plus Query: 317 aaccttggcatactgatcacgactgtaacaacagaaactccaacaataagaggtaaaact 376 ||||||||||| ||||| || | || || || |||||||| ||||||||||| || || Sbjct: 126951 aaccttggcatgctgatgaccaatgcaatcacggaaactccgacaataagaggaaataca 127010 Query: 377 ggggctgg 384 |||||||| Sbjct: 127011 ggggctgg 127018
>gb|U92838.1|MMSALH06 Mus musculus sialoadhesin gene, exons 8, 9, and 10 Length = 1772 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 ctgctcggtgtgtttcctgaa 274 ||||||||||||||||||||| Sbjct: 22 ctgctcggtgtgtttcctgaa 42
>gb|AC121959.3| Mus musculus BAC clone RP24-247N18 from chromosome 3, complete sequence Length = 187416 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 taacaacagaaactccaacaa 362 ||||||||||||||||||||| Sbjct: 153736 taacaacagaaactccaacaa 153756
>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence Length = 105004 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 71 aaatattagtcaacaatggtacaaa 95 |||||||||||||||||| |||||| Sbjct: 101295 aaatattagtcaacaatgttacaaa 101319
>gb|AC164560.3| Mus musculus BAC clone RP23-192D6 from chromosome 3, complete sequence Length = 200505 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 taacaacagaaactccaacaa 362 ||||||||||||||||||||| Sbjct: 170731 taacaacagaaactccaacaa 170711
>emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chromosome 2, complete sequence Length = 126358 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ctgctcggtgtgtttcctgaa 274 ||||||||||||||||||||| Sbjct: 11160 ctgctcggtgtgtttcctgaa 11140
>ref|XM_642090.1| Dictyostelium discoideum SNF2-related domain-containing protein (DDB0220518), partial mRNA Length = 9210 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 actgtaacaacagaaactccaaca 361 ||||||||||||| |||||||||| Sbjct: 8839 actgtaacaacagtaactccaaca 8862
>gb|AC125444.9| Mus musculus chromosome 1, clone RP24-499L20, complete sequence Length = 162238 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ctttctcaatattgtcttcc 242 |||||||||||||||||||| Sbjct: 12002 ctttctcaatattgtcttcc 11983
>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence Length = 203478 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 ctttctcaatattgtcttcc 242 |||||||||||||||||||| Sbjct: 195772 ctttctcaatattgtcttcc 195753
>gb|AC157983.16| Medicago truncatula clone mth2-130n5, complete sequence Length = 114996 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 atatttaagaggaccaacatgaat 444 ||||||||||||||||| |||||| Sbjct: 34798 atatttaagaggaccaaaatgaat 34821
>emb|AL158091.31| Human DNA sequence from clone RP5-824A14 on chromosome 20 Contains the 5' end of the BTBD4 gene for BTB (POZ) domain containing 4, part of a gene for a tissue plasminogen activator protein and two CpG islands, complete sequence Length = 41932 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cctttctgctcggtgtgttt 268 |||||||||||||||||||| Sbjct: 12460 cctttctgctcggtgtgttt 12441
>emb|BX890581.13| Zebrafish DNA sequence from clone CH211-222O19 in linkage group 21, complete sequence Length = 205143 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gtgatgccgctcttcagttt 419 |||||||||||||||||||| Sbjct: 50891 gtgatgccgctcttcagttt 50910
>emb|CR354427.7| Zebrafish DNA sequence from clone DKEY-263N17 in linkage group 18, complete sequence Length = 164758 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgtttcaggctctctttctc 229 |||||||||||||||||||| Sbjct: 128434 tgtttcaggctctctttctc 128415
>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence Length = 68440 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 tatgtttcaggctctctttc 227 |||||||||||||||||||| Sbjct: 64829 tatgtttcaggctctctttc 64810
>ref|XM_684436.1| PREDICTED: Danio rerio similar to apoptosis-inducing factor like isoform 1 (LOC561033), partial mRNA Length = 1355 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gtgatgccgctcttcagttt 419 |||||||||||||||||||| Sbjct: 848 gtgatgccgctcttcagttt 829
>ref|XM_680044.1| PREDICTED: Danio rerio similar to apoptosis-inducing factor like isoform 2 (LOC557064), mRNA Length = 1822 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gtgatgccgctcttcagttt 419 |||||||||||||||||||| Sbjct: 917 gtgatgccgctcttcagttt 898
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gtcagttcctgtttgtgatg 405 |||||||||||||||||||| Sbjct: 106996 gtcagttcctgtttgtgatg 106977
>gb|AC154554.2| Mus musculus BAC clone RP23-416P6 from chromosome 13, complete sequence Length = 204294 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tacaaaatattagtcaacaa 86 |||||||||||||||||||| Sbjct: 131842 tacaaaatattagtcaacaa 131823
>gb|AC093528.3| Homo sapiens chromosome 5 clone RP11-297K24, complete sequence Length = 198167 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 tatgtttcaggctctctttc 227 |||||||||||||||||||| Sbjct: 2684 tatgtttcaggctctctttc 2665
>emb|AL929193.19| Zebrafish DNA sequence from clone CH211-274P24 in linkage group 20, complete sequence Length = 159094 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 gtgatgccgctcttcagttt 419 |||||||||||||||||||| Sbjct: 136435 gtgatgccgctcttcagttt 136416
>emb|CR450838.5| Zebrafish DNA sequence from clone DKEY-283N16 in linkage group 18, complete sequence Length = 145250 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 tgtttcaggctctctttctc 229 |||||||||||||||||||| Sbjct: 91226 tgtttcaggctctctttctc 91207
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 acaaaatattagtcaacaat 87 |||||||||||||||||||| Sbjct: 2555987 acaaaatattagtcaacaat 2555968
>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence Length = 172084 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 cagttttatatttaagagga 433 |||||||||||||||||||| Sbjct: 26662 cagttttatatttaagagga 26643
>emb|AL671917.8| Mouse DNA sequence from clone RP23-217I18 on chromosome 3, complete sequence Length = 172826 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaatattagtcaacaatggt 90 |||||||||||||||||||| Sbjct: 59691 aaatattagtcaacaatggt 59710 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,610,615 Number of Sequences: 3902068 Number of extensions: 4610615 Number of successful extensions: 78065 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77972 Number of HSP's gapped (non-prelim): 91 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)