ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14c04 |
|---|---|
| Clone Library Name | barley_pub |
>OPSD_CATBO (Q17296) Rhodopsin| Length = 378 Score = 30.8 bits (68), Expect = 1.5 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = -2 Query: 390 WVAGPHICKIFGQTG---GCGNPFT 325 WV GP +C+++G TG GCG+ +T Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 368 AKYLGRREAAATPSPLCSSAXKKKKEIQPASQQVSESVP 252 AK+ ++ AA P SA K+KKE PA +S P Sbjct: 84 AKFAAKQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122
>Y1791_AQUAE (O67660) Hypothetical protein aq_1791| Length = 127 Score = 29.3 bits (64), Expect = 4.2 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -1 Query: 388 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 281 GS+ S M+N+ DGR ++ LC P R R+++ + Sbjct: 16 GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/43 (34%), Positives = 18/43 (41%) Frame = +2 Query: 293 LSSSSXPNCTEVKGLPQPPVCPNILHI*GPATHHGTKPIT*HL 421 LS+ S T + PQP P L P T T P T H+ Sbjct: 1388 LSTVSPTTSTPISSTPQPTSSPTTLPTTSPLTSSATSPTTSHI 1430
>T2R55_PONPY (Q645U9) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 256 TDSLTCWLAGCISFFFFXAELH 321 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 256 TDSLTCWLAGCISFFFFXAELH 321 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 256 TDSLTCWLAGCISFFFFXAELH 321 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 256 TDSLTCWLAGCISFFFFXAELH 321 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.5 bits (62), Expect = 7.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 256 TDSLTCWLAGCISFFFFXAELH 321 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSIFYFFKIAH 113
>HSLO_BACSU (P37565) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)| Length = 291 Score = 28.5 bits (62), Expect = 7.2 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -3 Query: 296 KEIQPASQQVSESVPVLFHCPASQQFF 216 +E+ ++ E++PV FHCP S++ F Sbjct: 216 EEVLGEKPEILETMPVRFHCPCSKERF 242
>Y118_CHLMU (P58106) Hypothetical RNA methyltransferase TC0118 (EC 2.1.1.-)| Length = 397 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 375 HICKIFGQTGGCGNPFTSVQFGXEEEE 295 H CK FG GGC +P T + + +E Sbjct: 6 HNCKHFGICGGCSSPQTEYELSLKAKE 32
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = -3 Query: 353 RREAAATPSPLCSSAXKKKKEIQPASQQVSESVPVLFHCPASQ 225 RR +P P ++A + E+ ++V+++VPV+ + P+ Q Sbjct: 159 RRRRRRSPRPRATAAYRSSAEVVERRRRVAQTVPVVRYHPSIQ 201
>OPSO_LIMPO (P35361) Ocellar opsin| Length = 376 Score = 28.1 bits (61), Expect = 9.4 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -2 Query: 402 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 319 F W+ GP +C+++G G GC + ++ V Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139
>OPSL_LIMPO (P35360) Lateral eye opsin| Length = 376 Score = 28.1 bits (61), Expect = 9.4 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%) Frame = -2 Query: 402 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 319 F W+ GP +C+++G G GC + ++ V Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139
>RNS10_RAT (Q5GAM0) Ribonuclease-like protein 10 precursor (Protein Train A)| Length = 212 Score = 28.1 bits (61), Expect = 9.4 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 13/59 (22%) Frame = -1 Query: 223 NSLFVDLDLNGE---------DKNVCK*AE----TESCRRLYAIARRMYYYVCTNSKQL 86 NS VD DL G D +CK A+ T +C L I ++ C N+KQL Sbjct: 151 NSPLVDCDLKGGKCHKSPRPFDLTLCKLAKPGQVTPNCHYLTYITEKVIIITCNNTKQL 209
>T2R55_GORGO (Q645Z3) Taste receptor type 2 member 55 (T2R55)| Length = 299 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +1 Query: 256 TDSLTCWLAGCISFFFFXAELH 321 T+ LT WLA C+S F+F H Sbjct: 92 TNHLTTWLATCLSVFYFFKIAH 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,351,947 Number of Sequences: 219361 Number of extensions: 1179172 Number of successful extensions: 3385 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3385 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
