ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14c03 |
|---|---|
| Clone Library Name | barley_pub |
>VD10_SFVKA (P32097) Protein D10| Length = 260 Score = 32.0 bits (71), Expect = 0.36 Identities = 20/68 (29%), Positives = 30/68 (44%) Frame = +2 Query: 56 TGMQNQAVDWSSKRLKKILEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTK 235 TG NQ + WS+K L ++T N F+A S H L +F+ F+T T+ Sbjct: 37 TGFSNQRLRWSNKT-SICLILSTLDNKFIACSRKHSFLYSEIVRCRSVFRKKRLFLTYTR 95 Query: 236 LPPSRPAP 259 + P Sbjct: 96 FLKKKERP 103
>TPP2_RAT (Q64560) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1248 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 37 LVNKGHYRYAKPGSRLVEQK-IKKNTRNCYQFKYVFSTKQCTPGSTN 174 LVNK + R K ++LVE+K K+N +NC Q + C + N Sbjct: 1189 LVNKMYGRGLKFATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTEN 1235
>TPP2_MOUSE (Q64514) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1261 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 37 LVNKGHYRYAKPGSRLVEQK-IKKNTRNCYQFKYVFSTKQCTPGSTN 174 LVNK + R K ++LVE+K K+N +NC Q + C + N Sbjct: 1202 LVNKMYGRGLKFATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTEN 1248
>TPP2_HUMAN (P29144) Tripeptidyl-peptidase 2 (EC 3.4.14.10)| (Tripeptidyl-peptidase II) (TPP-II) (Tripeptidyl aminopeptidase) Length = 1248 Score = 29.3 bits (64), Expect = 2.3 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +1 Query: 37 LVNKGHYRYAKPGSRLVEQK-IKKNTRNCYQFKYVFSTKQCTPGSTN 174 LVNK + R K ++LVE+K K+N +NC Q + C + N Sbjct: 1189 LVNKMYGRGLKFATKLVEEKPTKENWKNCIQLMKLLGWTHCASFTEN 1235
>CDK7_MOUSE (Q03147) Cell division protein kinase 7 (EC 2.7.11.22) (EC| 2.7.11.23) (CDK-activating kinase) (CAK) (TFIIH basal transcription factor complex kinase subunit) (39 kDa protein kinase) (P39 Mo15) (Protein-tyrosine kinase MPK-7) (CR4 protein kinas Length = 346 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +2 Query: 191 EDLFKMNTCFITT------TKLPPSRPAPTPGMEMP 280 + LF N C TT TK +RP PTPG ++P Sbjct: 273 QGLFLFNPCTRTTASQALKTKYFSNRPGPTPGCQLP 308
>RGS6_CAEEL (Q18563) Regulator of G-protein signaling rgs-6| Length = 737 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +1 Query: 196 FVQNEHMFHNHNQTPPKSTCAHARHGNASFIFGLFIRPQHNEQTLD 333 F+ F N TP K C ARH S G +RP ++ TLD Sbjct: 329 FLPANFSFKNPASTPTKLVCIRARH---SLSTGAVLRPLLHKYTLD 371
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 389 HTLFDLDGGMAVLLVPPWTSRVCSLCCGLMNKPKIKLAFP 270 H+LF ++GG AV L W S V C + + ++K P Sbjct: 3 HSLFLMNGGGAVFLEKHWRSVVSRSVCAYLLEAQLKAGQP 42
>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)| (NADPH-GOGAT) Length = 2111 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = -2 Query: 380 FDLDGGMAVLL--VPPWTSRVCSLCCGLMNKPKIKL-AFPCLAWAQVDLGG 237 FD D A+ + V PWT V C G M+ I + + LA A LGG Sbjct: 920 FDFDSSQAIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAMNRLGG 970
>CVP4_PIMHY (Q8T0W2) Pacifastin-like protease inhibitor cvp4 precursor| (Cysteine-rich venom protein 4) Length = 203 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +1 Query: 49 GHYRYAKPGSRLVEQKIKKNTRNC---YQFKYVFSTKQCTPG 165 G ++ KPG + E++ KKN C FKY + QC G Sbjct: 65 GTRKFPKPGKWISEKENKKNDEPCTPGENFKYYCNDCQCLDG 106
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 28.1 bits (61), Expect = 5.2 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = +2 Query: 95 RLKKILEIATSSNMFL-AQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGM 271 RL ++ IA N AQ+N +T T T +TT PP+ APTP Sbjct: 3455 RLLSLISIALPENKVSEAQANSGSGASSTTTATSTTSTTTTTAASTTPTPPT--APTPVT 3512 Query: 272 EMPAL 286 PAL Sbjct: 3513 SAPAL 3517
>INX10_CAEEL (Q22549) Innexin-10| Length = 559 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +1 Query: 100 KKNTRNCYQFKYVFSTKQCTPGSTNLIHHN*RFVQNEHMFHNHNQTPPKSTCAHAR 267 K+N +N Q Y ++ + TP + N +QN++ + N+ +TP S +R Sbjct: 490 KQNQQNATQPPYCYTNQNPTP------YQNQNQIQNQNQYSNYYRTPSLSRGTDSR 539
>VL2_HPV31 (P17389) Minor capsid protein L2| Length = 466 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/60 (26%), Positives = 28/60 (46%) Frame = +2 Query: 122 TSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALFSVYS 301 TS ++ L+ S++ ST + M+T ++T + P PG+ PA +YS Sbjct: 172 TSGHLLLSSSSI-------STHNYEEIPMDTFIVSTNNENITSSTPIPGVRRPARLGLYS 224
>NUKM_BRAOL (P42027) NADH-ubiquinone oxidoreductase 20 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-20KD) (CI-20KD) Length = 215 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/62 (32%), Positives = 27/62 (43%) Frame = +2 Query: 110 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKLPPSRPAPTPGMEMPALF 289 L + S+ A S++H +LP S T T T PPS AP PG+ A F Sbjct: 12 LPLVLQSHRAAAVSHLHTSLPALSPAT-------TPTSYTRPGPPSTSAPPPGLSKTAEF 64 Query: 290 SV 295 + Sbjct: 65 VI 66
>RPOA_SACOF (Q6ENT2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 110 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 238 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319
>RPOA_SACHY (Q6L370) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase alpha subunit) (RNA polymerase alpha subunit) Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 110 LEIATSSNMFLAQSNVHQALPI*STTTEDLFKMNTCFITTTKL 238 LE+ + + L ++N+H L + S T EDL ++N+ + KL Sbjct: 277 LELPSRTYNCLKRANIHTLLDLLSKTEEDLMRINSFRMEDGKL 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,884,602 Number of Sequences: 219361 Number of extensions: 1355855 Number of successful extensions: 3609 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3602 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
