ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl14b09 |
|---|---|
| Clone Library Name | barley_pub |
>EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) (Lysophospholipid receptor B3) Length = 378 Score = 30.8 bits (68), Expect = 0.92 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = -3 Query: 289 PRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCWLFSFS 119 P W + + A TCS +ERH + RP N V +G CWL +FS Sbjct: 109 PTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFS 168 Query: 118 V 116 + Sbjct: 169 L 169
>TT1_ARATH (Q8VWG3) TRANSPARENT TESTA 1 protein (Zinc finger protein TT1)| (TTL1) Length = 303 Score = 30.8 bits (68), Expect = 0.92 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Frame = +2 Query: 125 RKQPATTNNTRPMIERARPRYY-IFGMSFH-------PPSSFRTCRCHYRRRQ-HRPFPC 277 RK P + T+P P Y + G H P FRT + HY+R+ H+PF C Sbjct: 172 RKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSC 231
>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 331 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +2 Query: 56 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIF 196 P R P+L P + T RK P R I RAR + +IF Sbjct: 47 PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93
>EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor| Edg-3) (Endothelial differentiation G-protein coupled receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3) Length = 378 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = -3 Query: 289 PRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCWLFSFS 119 P W + + A TCS +ERH + RP N V +G CWL +F+ Sbjct: 108 PTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCWLIAFT 167 Query: 118 V 116 + Sbjct: 168 L 168
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +2 Query: 74 PALIPSPTVLTTSTNRKRKQPATTNNT 154 P+++PS +TT+ RKRK ++T+N+ Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840
>LSP2_DROME (Q24388) Larval serum protein 2 precursor (LSP-2) (Hexamerin 2)| Length = 701 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/60 (26%), Positives = 23/60 (38%) Frame = +2 Query: 92 PTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRCHYRRRQHRPF 271 P LTT + N P +E + Y FG + H S + +R H+PF Sbjct: 448 PESLTTYFEHFDSDISNAVNVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQRLNHKPF 507
>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel| interleukin receptor) Length = 538 Score = 29.6 bits (65), Expect = 2.0 Identities = 8/18 (44%), Positives = 15/18 (83%) Frame = -3 Query: 289 PRTWAREWAMLPPPIMAP 236 PR++ R+W ++PPP+ +P Sbjct: 516 PRSYLRQWVVIPPPLSSP 533
>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2485 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2496 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>FKS26_MOUSE (Q8R3L2) Protein FKSG26| Length = 676 Score = 29.3 bits (64), Expect = 2.7 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = +2 Query: 50 ITPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFR 229 I L T+P + S L+ + + Q R +IERA Y +FHP S Sbjct: 275 IVVLLQTSPYHVDSLLQLSDACRFQEDQEMA----RDLIERA---LYSMECAFHPLFSLT 327 Query: 230 --TCRCHYRRRQHRPF 271 TCR YRR ++R F Sbjct: 328 SGTCRLDYRRPENRSF 343
>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2492 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>FA53B_HUMAN (Q14153) Protein FAM53B| Length = 422 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +2 Query: 56 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 181 P ++TPA P ++ +R R QP N+ + ++R RP Sbjct: 244 PSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRP 285
>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2498 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -3 Query: 217 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 RW + + +D RP L V+GCCW F Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423
>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2493 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -3 Query: 250 PIMAPTCSERRRWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 128 P++A S RW H D+ + + S V+GCCW F Sbjct: 383 PVVAQAFS---RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/72 (23%), Positives = 35/72 (48%) Frame = +2 Query: 74 PALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRCHYRR 253 P++ P+P +L +T+++ + P TT + RP + G ++ S R +R Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRPY------KCSECGRAYRHRGSLVNHRHSHRT 489 Query: 254 RQHRPFPCPRPW 289 +++ CPR + Sbjct: 490 GEYQCSLCPRKY 501
>GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 625 Score = 28.5 bits (62), Expect = 4.5 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 19/82 (23%) Frame = +2 Query: 65 STTPALIP----------------SPT---VLTTSTNRKRKQPATTNNTRPMIERARPRY 187 S TPA+IP +PT V +R RK P T N M+E+ ++ Sbjct: 195 SDTPAIIPYTRAVLPLENGELARLTPTGVEVYDFEGHRLRKTPRTLNWNPVMVEKQGFKH 254 Query: 188 YIFGMSFHPPSSFRTCRCHYRR 253 Y+ + P R C +Y R Sbjct: 255 YMLKEIYEQPGVVRACLENYLR 276
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = +2 Query: 23 AYLI*SRYKITPLRS---TTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPR 184 A ++ SR K TP+ S TTP + PT S+ R TN + P ++ R + Sbjct: 882 AGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSSTTPRLSRLATNTSAPDLKNVRSK 938
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 7.8 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 152 CCWLLLAVFFFCS 114 CCW+L + F FCS Sbjct: 3646 CCWILASTFLFCS 3658
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 53 TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNT 154 T STTP +PT TTST + +TT T Sbjct: 218 TSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTT 251
>FA53B_MOUSE (Q8BGR5) Protein FAM53B| Length = 422 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +2 Query: 56 PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 181 P ++TPA P ++ R R QP N+ + ++R RP Sbjct: 245 PSANSTPASTPELARRSSGLARSRSQPCVLNDKKIGVKRRRP 286
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +2 Query: 59 LRSTTPALIPSPTVLTTSTN 118 L S T A +P PTV+TTSTN Sbjct: 575 LESDTIADLPDPTVVTTSTN 594
>TRX_DROME (P20659) Protein trithorax| Length = 3726 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Frame = +2 Query: 50 ITPLRSTTPALIPSPTVLTTSTNR-----KRKQPATTNNTRPMIERARPRYYIFGMSFHP 214 + P++ P+ S T T TNR +R++PA +N P++ P + H Sbjct: 3049 VNPMQQQAPSTTSSST--TRPTNRVLPMQQRQEPAPLSNECPVVSSPTPPKPVEQPIIHQ 3106 Query: 215 PSSFRTCRCHYRRRQHRPFP 274 +S +C Y ++ P P Sbjct: 3107 MTSASVSKC-YAQKSTLPSP 3125
>PET_ECOLI (O68900) Serine protease pet precursor (EC 3.4.21.-)| (Plasmid-encoded toxin pet) Length = 1295 Score = 27.7 bits (60), Expect = 7.8 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +1 Query: 28 FNMIPIQDYSTALNNSSAYSI--SYRPNYEYEQKKKTASNNQQH 153 F +P+ D+S+A N +A SI +Y + K K+++N Q + Sbjct: 94 FPALPVPDFSSATANGAATSIGGAYAVTVAHNAKNKSSANYQTY 137
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 7.8 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 152 CCWLLLAVFFFCS 114 CCW+L + F FCS Sbjct: 3650 CCWILASTFLFCS 3662 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,828,055 Number of Sequences: 219361 Number of extensions: 807632 Number of successful extensions: 3071 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3038 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
