ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWF19_SCHPO (Q09909) Cell cycle control protein cwf19 32 0.52
2SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Se... 30 1.2
3TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 41... 28 4.4
4PAND_BACHK (Q6HL14) Aspartate 1-decarboxylase precursor (EC 4.1.... 28 4.4
5PAND_BACCZ (Q63DJ1) Aspartate 1-decarboxylase precursor (EC 4.1.... 28 4.4
6PAND_BACC1 (Q73AV2) Aspartate 1-decarboxylase precursor (EC 4.1.... 28 4.4
7PAND_BACAN (Q81ST1) Aspartate 1-decarboxylase precursor (EC 4.1.... 28 4.4
8VGF_HUMAN (O15240) Neurosecretory protein VGF precursor 28 7.5

>CWF19_SCHPO (Q09909) Cell cycle control protein cwf19|
          Length = 639

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 219 NQTGCETFHPGTENYHHSRHGNPGHPCHFGTHRPA 323
           N+T  ET H     +HHSRH    H  H  + RP+
Sbjct: 16  NETDRETNHSRRHRHHHSRHRESKHGRHDRSERPS 50



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>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein|
           Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2;
           Selenoprotein Se-P1]
          Length = 385

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 225 TGCETFHPGTENYHHSRHGNPGHPCHFGTHRPAQS 329
           T  +T  P  E+ HH  H   GH  H G+ +P+++
Sbjct: 193 TASKTTEPSEEHNHHKHHDKHGHE-HLGSSKPSEN 226



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>TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 417 precursor|
          Length = 713

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 156 KSDRSAINSEQGCLEALFPPRSELVIVCYIFVASVICHKS 37
           +SD + +   +GCL    PP ++  ++CY+   S   +KS
Sbjct: 639 ESDSNGVTGIKGCLNCAPPPNNKGSVLCYLIKDSGSTNKS 678



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>PAND_BACHK (Q6HL14) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 127

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 123 GCLEALFPPRSELVIVCYIFVASVICHKSYPKV 25
           G    L  P  +++I+CY  VA    HK  PK+
Sbjct: 73  GAAARLVQPGDKVIIICYGLVAEENIHKQEPKI 105



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>PAND_BACCZ (Q63DJ1) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 127

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 123 GCLEALFPPRSELVIVCYIFVASVICHKSYPKV 25
           G    L  P  +++I+CY  VA    HK  PK+
Sbjct: 73  GAAARLVQPGDKVIIICYGLVAEENIHKQEPKI 105



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>PAND_BACC1 (Q73AV2) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 127

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 123 GCLEALFPPRSELVIVCYIFVASVICHKSYPKV 25
           G    L  P  +++I+CY  VA    HK  PK+
Sbjct: 73  GAAARLVQPGDKVIIICYGLVAEENIHKQEPKI 105



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>PAND_BACAN (Q81ST1) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)|
           (Aspartate alpha-decarboxylase) [Contains: Aspartate
           1-decarboxylase beta chain; Aspartate 1-decarboxylase
           alpha chain]
          Length = 127

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 123 GCLEALFPPRSELVIVCYIFVASVICHKSYPKV 25
           G    L  P  +++I+CY  VA    HK  PK+
Sbjct: 73  GAAARLVQPGDKVIIICYGLVAEENIHKQEPKI 105



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>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor|
          Length = 616

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 194 PLPSPLDEEPDWLRDLPSWN 253
           P PS  DE PDW   LP W+
Sbjct: 512 PPPSARDELPDWNEVLPPWD 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,307,218
Number of Sequences: 219361
Number of extensions: 819774
Number of successful extensions: 2114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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